CN188468

Overview
NameCN188468
Unique NameCN188468
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:936..1484. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188468 vs. ExPASy Swiss-Prot
Match: TRXB_MYCLE (Bifunctional thioredoxin reductase/thioredoxin OS=Mycobacterium leprae GN=trxB/A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = 1
Query:  118 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 348
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD    +A E+ V ++PT +L + G+ ++RIVGAK
Sbjct:  364 LSSNKPVLVDFWATWCGPCKMVAPVLEEIASEQRNQLTVAKLDVDTNPEMAREFQVVSIPTMILFQGGQPVKRIVGAK 441          
BLAST of CN188468 vs. ExPASy Swiss-Prot
Match: THIO_MYCSM (Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.702e-11
Identity = 32/80 (40.00%), Postives = 53/80 (66.25%), Query Frame = 1
Query:  118 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP---AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 348
            + + K ++VDF A+WC PCK+++P+L E+A +      V  + VDVD   + A ++ V ++PT +L K+G  ++RIVGAK
Sbjct:   20 LGSSKPVLVDFWATWCGPCKMVAPVLEEIAAEKGDQLTVAKIDVDVDANPATARDFQVVSIPTMILFKDGAPVKRIVGAK 99          
BLAST of CN188468 vs. ExPASy Swiss-Prot
Match: THIO1_DROYA (Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.753e-11
Identity = 35/97 (36.08%), Postives = 57/97 (58.76%), Query Frame = 1
Query:   73 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 360
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K     + LK+DVD+ + + E + V +MPTFV  +  + L    GA + +L
Sbjct:    3 SVRTMTDFHKRIEA--ADDKLIVLDFYANWCGPCKDMESTVKSLARKYSTKAVVLKIDVDKFEELTERYKVRSMPTFVFLRNNRRLAAFSGADEHKL 97          
The following BLAST results are available for this feature:
BLAST of CN188468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXB_MYCLE6.702e-1139.74Bifunctional thioredoxin reductase/thioredoxin OS=... [more]
THIO_MYCSM6.702e-1140.00Thioredoxin OS=Mycobacterium smegmatis GN=trxA PE=... [more]
THIO1_DROYA8.753e-1136.08Thioredoxin-1 OS=Drosophila yakuba GN=dhd PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188468 ID=CN188468; Name=CN188468; organism=Citrus sinensis; type=EST; length=546bp
CCGTGAAATCAGAACAGAGAAGTAATTTAACTTGTGATCATAATTAAGAT
GGCCGAGGAGGGACAAGTGATCAGCTGCCACACTGTTGAATCCTGGAACG
AGCAGCTCCAAAAGGGCATTGCGGCAAAGAAACTGATAGTGGTGGATTTT
ACGGCTTCATGGTGCCCGCCATGCAAGTTGATGTCTCCAATTTTGAGTGA
ATTGGCGAAGAAGCTGCCCGCTGTCATATTCTTGAAGGTGGATGTTGATG
AATTGAAGTCTGTCGCTGAGGAATGGGCTGTGGAAGCCATGCCGACCTTT
GTACTGACGAAAGAAGGCAAAGTCCTGGAGAGGATTGTGGGAGCGAAGAA
AGATGAGCTGCAGCTGGCTGTCGAAAAGCACGCAACTGTTGAGAATGCAA
CTACTGCTAATGCTTGATTGATGCGTACATGAATCTCACTGGTCTTTTAT
TGTAAGATGTGTGTTTGTGGTTGCTTAATGTAAGAATATGGTACCATGTT
TAACAGGCCTGTATATATGAATAAATGACAATCTTCTACCAAAAAA
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