CN188467

Overview
NameCN188467
Unique NameCN188467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length546
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.136e-33
Identity = 58/105 (55.24%), Postives = 81/105 (77.14%), Query Frame = -1
Query:  175 EGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 489
            EG V +CH+ E W  +LQ+ I  K+L+ VDFTA+WC PC+++ P+  EL+KK P + FLKVDVDEL+ VA+EW VEAMPTF+  K+GK ++++VGAKKD+L+  V
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDLERKV 107          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSJ (Thioredoxin H-type OS=Oryza sativa subsp. japonica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.830e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  166 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 495
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_ORYSI (Thioredoxin H-type OS=Oryza sativa subsp. indica GN=TRXH PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.830e-31
Identity = 58/110 (52.73%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  166 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 495
            AEEG VI+CH  + ++ Q+ K   A K++++DFTASWC PC+ ++P+ +E AKK P  +FLKVDVDELK VAE++ VEAMPTF+  K+G   +++VGA+KD+LQ  + KH
Sbjct:    3 AEEGVVIACHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKDDLQNTIVKH 112          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_BRAOL (Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  157 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATV 486
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH1_BRANA (Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 6.446e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  157 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATV 486
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAQEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_BRARA (Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 8.419e-30
Identity = 60/110 (54.55%), Postives = 83/110 (75.45%), Query Frame = -1
Query:  157 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATV 486
            G+VI+CHTVE WN +L+    + KLIV+DFTA WCPPC+ ++PI  ELAKK   V+F KVDVDEL +VA+E+ V+AMPTFV  K  + L+++VGA K+E++  + KH+ V
Sbjct:   11 GEVIACHTVEDWNNKLKAAKESNKLIVIDFTAVWCPPCRFIAPIFVELAKKHLDVVFFKVDVDELATVAKEFDVQAMPTFVYMKGEEKLDKVVGAAKEEIEAKLLKHSQV 120          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH2_ARATH (Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TRX2 PE=2 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 9.968e-23
Identity = 52/109 (47.71%), Postives = 72/109 (66.06%), Query Frame = -1
Query:  169 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 495
            +E  +V+   +   W     +   + KL+VVDF+ASWC PC+++ P +  +A K   V F+K+DVDEL  VA+E+ V AMPTFVL K GK +ERI+GAKKDEL+  V K
Sbjct:   22 SEPSRVLKFSSSARWQLHFNEIKESNKLLVVDFSASWCGPCRMIEPAIHAMADKFNDVDFVKLDVDELPDVAKEFNVTAMPTFVLVKRGKEIERIIGAKKDELEKKVSK 130          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH_CHLRE (Thioredoxin H-type OS=Chlamydomonas reinhardtii GN=TRXH PE=1 SV=3)

HSP 1 Score: 97.8265 bits (242), Expect = 3.545e-20
Identity = 51/109 (46.79%), Postives = 70/109 (64.22%), Query Frame = -1
Query:  163 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 486
            G VI   +  +W+ QL KG    K IVVDFTA+WC PCK+++P+   L+      VIFLKVDVD + +VAE   + AMPTF + K+G   + +VGA +D+L+  V KHA
Sbjct:    3 GSVIVIDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVYKDGVKADDLVGASQDKLKALVAKHA 111          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: TRXH9_ARATH (Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TRX9 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 43/104 (41.35%), Postives = 67/104 (64.42%), Query Frame = -1
Query:  175 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 486
            G V    T ESW+++L +     K++V +F+A+WC PCK+++P   EL++K  +++FL VDVDEL   +  W ++A PTF   K G+ + ++VGA K ELQ  V
Sbjct:   23 GNVHLITTKESWDDKLAEADRDGKIVVANFSATWCGPCKIVAPFFIELSEKHSSLMFLLVDVDELSDFSSSWDIKATPTFFFLKNGQQIGKLVGANKPELQKKV 126          
BLAST of CN188467 vs. ExPASy Swiss-Prot
Match: THIOT_DROME (Thioredoxin-T OS=Drosophila melanogaster GN=TrxT PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.151e-17
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = -1
Query:  157 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLP-AVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATV 429
            +A  KL+V+DF A WC PCK+++P L ELA +    V+ LKV+VDE + +  E+ V +MPTFV  K G VLE  VG   D+L   +EKHA V
Sbjct:   17 LAEDKLVVIDFYADWCGPCKIIAPKLDELAHEYSDRVVVLKVNVDENEDITVEYNVNSMPTFVFIKGGNVLELFVGCNSDKLAKLMEKHAGV 108          
The following BLAST results are available for this feature:
BLAST of CN188467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXH_PICMA8.136e-3355.24Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_ORYSJ5.830e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. japonica... [more]
TRXH_ORYSI5.830e-3152.73Thioredoxin H-type OS=Oryza sativa subsp. indica G... [more]
TRXH_BRAOL6.446e-3054.55Thioredoxin H-type OS=Brassica oleracea GN=BOPC17 ... [more]
TRXH1_BRANA6.446e-3054.55Thioredoxin H-type 1 OS=Brassica napus GN=THL-1 PE... [more]
TRXH_BRARA8.419e-3054.55Thioredoxin H-type OS=Brassica rapa GN=PEC-2 PE=2 ... [more]
TRXH2_ARATH9.968e-2347.71Thioredoxin H-type 2 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_CHLRE3.545e-2046.79Thioredoxin H-type OS=Chlamydomonas reinhardtii GN... [more]
TRXH9_ARATH6.686e-1941.35Thioredoxin H-type 9 OS=Arabidopsis thaliana GN=TR... [more]
THIOT_DROME2.151e-1748.91Thioredoxin-T OS=Drosophila melanogaster GN=TrxT P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006B18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188467 ID=CN188467; Name=CN188467; organism=Citrus sinensis; type=EST; length=546bp
CTTTTTTTTGGAGAGATTGTCATTTATTCTATATACAGGCCTGTTAAACA
TCGTTTCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAA
AAGACCAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGC
ATTCTCAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCT
TCGCTCCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAG
GTCGGCATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATC
AACATCCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCAC
TCAAAATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAA
TCCACCACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTT
CCAGGATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCT
TAATTATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTCCT
back to top