CN188450

Overview
NameCN188450
Unique NameCN188450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARFRP_MOUSE (ADP-ribosylation factor-related protein 1 OS=Mus musculus GN=Arfrp1 PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 60/179 (33.52%), Postives = 100/179 (55.87%), Query Frame = -3
Query:  282 FAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 764
            F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E+++   ++++ + L    +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   13 FQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLSESKEAFEKVVSSEALDGVPILVLANKQDVETCLSIPDIKTAFSDCTCKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARFRP_HUMAN (ADP-ribosylation factor-related protein 1 OS=Homo sapiens GN=ARFRP1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.194e-22
Identity = 60/179 (33.52%), Postives = 98/179 (54.75%), Query Frame = -3
Query:  282 FAKKEMRILMVGLDAAGKTTIL----------YK-LKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI-------TDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 764
            F K E  IL++GLD AGKTT L          YK + L +I TT+   G N+ TV+        WD+GGQ++++ LW  Y+    G+I+V+DS D +R+ E++    +++  + L    +LV ANKQD+   ++  +I       T K+G     +R    Q+  A +G+G+ EG++W+
Sbjct:   13 FQKDEYCILILGLDNAGKTTFLEQSKTRFNKNYKGMSLSKITTTV---GLNIGTVDVGKARLMFWDLGGQEELQSLWDKYYAECHGVIYVIDSTDEERLAESKQAFEKVVTSEALCGVPVLVLANKQDVETCLSIPDIKTAFSDCTSKIG-----RRDCLTQACSALTGKGVREGIEWM 183          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 58/171 (33.92%), Postives = 92/171 (53.80%), Query Frame = -3
Query:  276 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSN 755
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R  EA+ EL  +L+ +EL     +V  NK D P+A++  E+  +LG           L  +R    ++ S     G G  +G+ WLS+
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDYFPEVNGVVFLVDAKDHERFPEAKAELDALLSMEELSKVPFVVLGNKIDHPDAVSEDELRHQLGMYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--DGIRWLSH 187          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARD1_CAEEL (Putative GTP-binding protein ard-1 homolog OS=Caenorhabditis elegans GN=arc-1 PE=2 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 8.089e-22
Identity = 48/116 (41.38%), Postives = 77/116 (66.38%), Query Frame = -3
Query:  414 EMRILMVGLDAAGKTTILYKLKLGEIVTTI---PTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQD 752
            E R++++GLD AGKT+I+ +LK  ++ T +   PTIGFN+ET+ YKN     WDVGG  K+R LW+HY+ N Q + +V+D    +R  EA  EL+R++++  +    ++V  N++D
Sbjct:  369 ESRVVLLGLDGAGKTSIVRRLKKVQMDTVMAPHPTIGFNIETIHYKNYRLNFWDVGGLPKLRHLWKHYYSNAQAIFYVIDGYAVERFSEAIKELNRVMSDPLVGTCPVIVAVNRKD 484          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 57/173 (32.95%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  270 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLG-----------LHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 755
            K  ++L +GLD AGKTT+L+ LK   +    PT+    E +   N+ FT +D+GG  + R LW+ YF    G++F+VD+ D +R+ EA+ E+  +L+ +EL     +V  NK D P A++  E+  +LG           L  +R    ++ S     G G  E + WLS  +
Sbjct:   19 KHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDYFPEVNGIVFLVDAKDHERLPEAKAEIDALLSMEELAKVPFVVLGNKIDHPEAVSEDELRQRLGLWQTTGKGRVPLEGIRPIEVFMCSVVMRQGYG--EAIRWLSQYV 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  270 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 755
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  270 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 755
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.380e-21
Identity = 59/173 (34.10%), Postives = 91/173 (52.60%), Query Frame = -3
Query:  270 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 755
            K  ++L +GLD AGKTT+L+ LK   + T  PT     E +   N  FT +D+GG  + R LW+ YF    G++F+VD+ D +R  E++ EL  +L  +EL     L+  NK D P+A++  E+  +LGL+            +R    ++ S     G G  EG+ WLS  +
Sbjct:   19 KHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELSKVPFLILGNKIDHPDAVSEDELRHQLGLYQTTGKGKVPLEGIRPIEVFMCSVVMRQGYG--EGIRWLSQYV 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.354e-21
Identity = 59/173 (34.10%), Postives = 90/173 (52.02%), Query Frame = -3
Query:  270 KEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH-----------SLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 755
            K  ++L +GLD AGKTT+L+ LK   + T  PT+    E +   N+ FT +D+GG  + R LWR YF    G++F+VDS D +R  E++ EL  +L+ + L     L+  NK D   A++  ++  +LGL+            +R    ++ S     G G  EG  WLS  I
Sbjct:   19 KSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQTTGKGKIPLRDIRPIEVFMCSVVMRQGYG--EGFRWLSQYI 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARL3_YEAST (ADP-ribosylation factor-like protein 3 OS=Saccharomyces cerevisiae GN=ARL3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.354e-21
Identity = 60/170 (35.29%), Postives = 96/170 (56.47%), Query Frame = -3
Query:  282 KKEMRILMVGLDAAGKTTIL------YKLKLGEIVTTIPTIGFNVET--VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM---NAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWL 758
            K++  IL++GLD AGKTT L      Y L    +    PT+G NV T  V+ K I    WDVGGQ+ +R +W  Y+    G+IF+VDS+DR+R+ E    L  ++ ++E+    +L+ ANKQD  + M   +  E+ +K+  H +  R   +    A +GEG+ + ++W+
Sbjct:   15 KEQYSILILGLDNAGKTTFLETLKKEYSLAFKALEKIQPTVGQNVATIPVDSKQI-LKFWDVGGQESLRSMWSEYYSLCHGIIFIVDSSDRERLDECSTTLQSVVMDEEIEGVPILMLANKQDRQDRMEVQDIKEVFNKIAEH-ISARDSRVLPISALTGEGVKDAIEWM 182          
The following BLAST results are available for this feature:
BLAST of CN188450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARFRP_MOUSE6.194e-2233.52ADP-ribosylation factor-related protein 1 OS=Mus m... [more]
ARFRP_HUMAN6.194e-2233.52ADP-ribosylation factor-related protein 1 OS=Homo ... [more]
SAR1_CHAGB8.089e-2233.92Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
ARD1_CAEEL8.089e-2241.38Putative GTP-binding protein ard-1 homolog OS=Caen... [more]
SAR1_NEUCR1.380e-2132.95Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_NEOFI1.380e-2134.10Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_ASPFU1.380e-2134.10Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_ASPCL1.380e-2134.10Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_CRYNE2.354e-2134.10Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
ARL3_YEAST2.354e-2135.29ADP-ribosylation factor-like protein 3 OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188450 ID=CN188450; Name=CN188450; organism=Citrus sinensis; type=EST; length=820bp
TTTTTGCGAAAACAATTTCAATGAGTGGTGCACCAAATTAGTTTAAATTA
CCGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCCAACCAAC
AATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAAACAACAC
AACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAAAAATAGA
TAATATTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGATCTTAAC
AGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAGACCTTCA
TAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACCAGTGGCG
CTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCAGCATTCA
TTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACACTGCATCT
CGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTGCTTCTAC
AATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCTTGAGTGT
TCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCCACCAACA
TCCCACACAGTGAAACTGATGTTCTTATATTCAACGGTCTCCACATTAAA
CCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGCTTGTACA
AGATAGTGGTCTTACCAGCAGCATCAAGACCAACCATTAGAATTCGCATC
TCTTTCTTGGCAAAAGAGCCGGCTGAACAGCTTTGTGAAAGTCAGCCCCA
TTCTTCCGGCTGGGGATCAC
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