CN188450

Overview
NameCN188450
Unique NameCN188450
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length820
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:67..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 9.752e-68
Identity = 120/164 (73.17%), Postives = 141/164 (85.98%), Query Frame = -3
Query:  273 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 764
            F  KEMRILM+GLDAAGKTTILYKLKLG+ VTTIPT+GFNVETV YKN+ F VWDVGGQDKIRPLWRHY+  TQGLIFVVD  DRDRI EAR ELHR++N+ E+RDA++L+FANKQDLP+AM   EI +KLGL  +R R+WY+Q +CATSG+GL EGL WL++N
Sbjct:    9 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSN 172          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 249.21 bits (635), Expect = 2.033e-65
Identity = 118/166 (71.08%), Postives = 141/166 (84.94%), Query Frame = -3
Query:  261 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 758
            K ++RILMVGLD +GKTTILYKLKLGE+VTT+PTIGFN+ETVEYK I+FTVWD+GGQ+KIR LWRHYFQN QGLIFVVDS+D +R+ EAR+ELHR+L ++EL  A +LVFANKQD  NA+  AE+ +KLGLHSL +R W IQ T A SG+GLYEGL+WLS  I NK
Sbjct:   15 KSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTIPNK 180          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF2_SCHPO (Probable ADP-ribosylation factor OS=Schizosaccharomyces pombe GN=SPBC1539.08 PE=2 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 2.104e-62
Identity = 115/164 (70.12%), Postives = 134/164 (81.71%), Query Frame = -3
Query:  273 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNN 764
            F+ KEMRILM+GLDAAGKTTILYKLKL + V TIPT+GFNVETV YKNI F VWDVGGQDKIRPLWRHYF  T+GLIFVVDS D +RI EAR ELHR++++ E+RD +LLV ANKQDLP A++ A+ITD L L  L+ R W +Q TCA +G+GL EGL WLS N
Sbjct:   17 FSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLSQN 180          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF3_ARATH (ADP-ribosylation factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 227.254 bits (578), Expect = 8.195e-59
Identity = 105/165 (63.64%), Postives = 131/165 (79.39%), Query Frame = -3
Query:  270 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 764
            F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L EDEL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEDELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          

HSP 2 Score: 21.1718 bits (43), Expect = 8.195e-59
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = -2
Query:  763 MGLTFTKLFSRLF 801
            MG+ FT++FS +F
Sbjct:    1 MGILFTRMFSSVF 13          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 1.081e-58
Identity = 101/166 (60.84%), Postives = 134/166 (80.72%), Query Frame = -3
Query:  261 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 758
            KKE RILM+GLD AGK+T+LYKLKLG++V+TIPTIGFNVET+EYKN+S TVWDVGGQ KIRPLW+HY+  +  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LVFANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   23 KKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARF1_BRARP (ADP-ribosylation factor 1 OS=Brassica rapa subsp. pekinensis GN=ARF1 PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.368e-58
Identity = 104/165 (63.03%), Postives = 131/165 (79.39%), Query Frame = -3
Query:  270 FAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 764
            F  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NTQ +I+VVDS+D DRI  A++E H +L E+EL+ AV+L+FANKQDLP A++ A +T+ L LH ++ R W I  TCA  GEGL+EGLDWLSN +
Sbjct:   13 FGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTQAVIYVVDSSDTDRIGVAKEEFHAILEEEELKGAVVLIFANKQDLPGALDDAAVTEALELHKIKSRQWAIFKTCAVKGEGLFEGLDWLSNTL 177          

HSP 2 Score: 21.1718 bits (43), Expect = 2.368e-58
Identity = 7/13 (53.85%), Postives = 11/13 (84.62%), Query Frame = -2
Query:  763 MGLTFTKLFSRLF 801
            MG+ FT++FS +F
Sbjct:    1 MGILFTRMFSSVF 13          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.020e-56
Identity = 99/167 (59.28%), Postives = 133/167 (79.64%), Query Frame = -3
Query:  261 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCA-TSGEGLYEGLDWLSNNIANK 758
            KK+ RILM+GLD AGK+T+LYKLKLG+IV+T+PTIGFNVET+EYKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L ++EL+   +L+FANKQD+ NAMN +EI D L L+S++ R WY+Q   A  S  G+YEG DW++N++ NK
Sbjct:   23 KKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNNK 189          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 97/166 (58.43%), Postives = 130/166 (78.31%), Query Frame = -3
Query:  261 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANK 758
            KK+ RILM+GLD AGK+T+L+KLKLG++V TIPTIGFNVET+ YKN+S TVWDVGGQ KIR LW+HY+  T  +IFVVDS DR+R+ E ++E+  +L +DEL+   +LV ANKQD+ NAMN AEI + L L+S++ R WY+Q   A   +G+YEG DW++N++ NK
Sbjct:   23 KKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNNK 188          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARD1_MOUSE (GTP-binding protein ARD-1 OS=Mus musculus GN=Trim23 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.249e-55
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = -3
Query:  270 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 758
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
BLAST of CN188450 vs. ExPASy Swiss-Prot
Match: ARD1_HUMAN (GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM23 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 7.249e-55
Identity = 103/164 (62.80%), Postives = 127/164 (77.44%), Query Frame = -3
Query:  270 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRIVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSL-RQRHWYIQSTCATSGEGLYEGLDWLSNNI 758
            K E+R++ +GLD AGKTTIL+KLK  E +  IPTIGFNVETVEYKN+ FT+WDVGG+ K+RPLW+HY+ NTQ ++FVVDS+ RDRI EA  EL ++L E ELRDA+LL+FANKQD+  A++  EIT+ L LH L   R WYIQ   A SG GLYEGLDWLS  +
Sbjct:  402 KMEIRVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEITELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 565          
The following BLAST results are available for this feature:
BLAST of CN188450 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 217
Match NameE-valueIdentityDescription
ARF3_DROME9.752e-6873.17ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARF4_ARATH2.033e-6571.08Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF2_SCHPO2.104e-6270.12Probable ADP-ribosylation factor OS=Schizosaccharo... [more]
ARF3_ARATH8.195e-5963.64ADP-ribosylation factor 3 OS=Arabidopsis thaliana ... [more]
ARFJ_DICDI1.081e-5860.84ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF1_BRARP2.368e-5863.03ADP-ribosylation factor 1 OS=Brassica rapa subsp. ... [more]
ARFH_DICDI5.020e-5659.28ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARFK_DICDI8.563e-5658.43ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARD1_MOUSE7.249e-5562.80GTP-binding protein ARD-1 OS=Mus musculus GN=Trim2... [more]
ARD1_HUMAN7.249e-5562.80GTP-binding protein ARD-1 OS=Homo sapiens GN=TRIM2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188450 ID=CN188450; Name=CN188450; organism=Citrus sinensis; type=EST; length=820bp
TTTTTGCGAAAACAATTTCAATGAGTGGTGCACCAAATTAGTTTAAATTA
CCGATATCTAAACCGAGCCAAAAACCTTGGAGTACATGTATCCAACCAAC
AATTCTTCTAGTACAATATAGTTGTAAAGATCCTAGGGCCAAAACAACAC
AACAACCCAACCGTCTCAAACAAAAAGGGTTAAAAAAGAAAAAAAATAGA
TAATATTCACCCCTGCATCCAGAATCGCCAGTCCGCAAAAAGATCTTAAC
AGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAATCCAGACCTTCA
TAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGATGTACCAGTGGCG
CTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCTCAGCAGCATTCA
TTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGCAACACTGCATCT
CGCAGCTCATCCTCATTCAACATCCTATGCAATTCATCCCTTGCTTCTAC
AATACGGTCTCTGTCATTGCTGTCCACAACAAAAATGAGACCTTGAGTGT
TCTGGAAATAATGCCTCCACAAGGGACGAATCTTGTCCTGGCCACCAACA
TCCCACACAGTGAAACTGATGTTCTTATATTCAACGGTCTCCACATTAAA
CCCAATGGTAGGAATTGTGGTGACAATCTCTCCAAGCTTGAGCTTGTACA
AGATAGTGGTCTTACCAGCAGCATCAAGACCAACCATTAGAATTCGCATC
TCTTTCTTGGCAAAAGAGCCGGCTGAACAGCTTTGTGAAAGTCAGCCCCA
TTCTTCCGGCTGGGGATCAC
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