CN188447
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPOB_DESHD (DNA-directed RNA polymerase subunit beta OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rpoB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 53/201 (26.37%), Postives = 91/201 (45.27%), Query Frame = 2 Query: 158 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTRRDHSISLRHSETGMVDQVLLTTNADG-------LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 709 +L G N ++A + GYN ED++++++ + ++ S+ Y + + L E+ R + + LD+ G+ G VS D+++GK TP + E G+ +R R D S+ + H E G + V + T +G V+V + R +GDK + RHG KG + QEDMP+ Sbjct: 654 ELALGRNVLIAFMTWEGYNYEDAILISEKLVKEDYYTSIHIEEYEADARDT-KLGPEEITR----DIPNVGEDVLKDLDERGIIRIGAEVSTGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR-DTSLRVPHGEAGKIVDVKVFTRENGDELAPGVNELVRVYIAQKRKISVGDKMAGRHGNKGVISRIMKQEDMPF 848
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPOB_DEHE1 (DNA-directed RNA polymerase subunit beta OS=Dehalococcoides ethenogenes (strain 195) GN=rpoB PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 57/203 (28.08%), Postives = 96/203 (47.29%), Query Frame = 2 Query: 158 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTRRDHSISLRHSETGMVDQVLLTT--NADGL-----RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 709 +L G N +VA + G+N ED++I+++ + F S+ + E + K+G G + + S +LD+DG+ G V +D+++GK TP + E G+ +R + D S+ + H E G V V + + N D L ++V+V V R +GDK + RHG KG + + EDMP+ Sbjct: 721 ELALGQNCVVAFMSWQGFNYEDAIILSERLVREDAFTSIHITKHELEAHDTKLG-------GEEITRDIPNVGEESLRELDEDGIIRIGAEVGPDDILVGKITPKGETELSAEEKLLRAIFGEKAREVK-DTSLRMPHGEWGKVINVRVFSRENGDDLPARVNKWVQVWVAQKRKVSVGDKLAGRHGNKGVISIIAPVEDMPY 915
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPO2_VACCA (DNA-directed RNA polymerase 132 kDa polypeptide OS=Vaccinia virus (strain Ankara) GN=RPO132 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 66/246 (26.83%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 5 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE--TGMVDQVLLTTNADGLRFVKVRVRSV--RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 PR A KQA+ ++ + ++D +++Y P++P+V ++A+E G + +A+ Y G NQED +I+ + I RG + + ++ E + E+F +R R +Y KL+ +GL + D I + + ++ RD+ IS SE T M + + VKVRV ++ R P +GDKF++R QKGTV + ++P+ ITP Sbjct: 677 PRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY-PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVE------IPLENFNNKERD-----RSNAYSKLESNGLVRLNAFLESGDAIARNISSRTLEDD-------FARDNQISFDVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYIADETELPYDENGITP 903
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPO2_RABPU (DNA-directed RNA polymerase 132 kDa polypeptide OS=Rabbitpox virus (strain Utrecht) GN=RPO132 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14 Identity = 66/246 (26.83%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 5 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE--TGMVDQVLLTTNADGLRFVKVRVRSV--RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 PR A KQA+ ++ + ++D +++Y P++P+V ++A+E G + +A+ Y G NQED +I+ + I RG + + ++ E + E+F +R R +Y KL+ +GL + D I + + ++ RD+ IS SE T M + + VKVRV ++ R P +GDKF++R QKGTV + ++P+ ITP Sbjct: 685 PRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY-PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVE------IPLENFNNKERD-----RSNAYSKLESNGLVRLNAFLESGDAIARNISSRTLEDD-------FARDNQISFDVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYIADETELPYDENGITP 911
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPOB_CLOD6 (DNA-directed RNA polymerase subunit beta OS=Clostridium difficile (strain 630) GN=rpoB PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14 Identity = 56/208 (26.92%), Postives = 97/208 (46.63%), Query Frame = 2 Query: 158 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTRRDHSISLRHSETGMVDQVLLTT--NADGL-----RFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 ++ G N ++A + GYN ED++++N+ + ++ Y E + L E+ R + + + LDD G+ G V D+++GK TP + E G+ +R R D S+ + H E+G++ V + T N D L V+ + R ++GDK + RHG KG + +EDMP+ +E+ TP Sbjct: 765 EVALGRNCLIAFMTWEGYNYEDAILINERLVKEDRLSTIHIEEYECEARDT-KLGPEEITR----DIPNVGDSAIKNLDDRGIIRIGAEVDSGDILVGKVTPKGETELTAEERLLRAIFGEKAREVR-DTSLKVPHGESGIIVDVKVFTRENGDDLSPGVNELVRCYIAKKRKIKVGDKMAGRHGNKGVISRVLPEEDMPF-MENGTP 965
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPO2_VACCW (DNA-directed RNA polymerase 132 kDa polypeptide OS=Vaccinia virus (strain Western Reserve) GN=RPO132 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14 Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 5 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE--TGMVDQVLLTTNADGLRFVKVRVRSV--RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 PR A KQA+ ++ + ++D +++Y P++P+V ++A+E G + +A+ Y G NQED +I+ + I RG + + ++ E + E+F +R R +Y KL+ +GL + D + + + ++ RD+ IS SE T M + + VKVRV ++ R P +GDKF++R QKGTV + ++P+ ITP Sbjct: 685 PRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY-PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVE------IPLENFNNKERD-----RSNAYSKLESNGLVRLNAFLESGDAMARNISSRTLEDD-------FARDNQISFDVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYVADETELPYDENGITP 911
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPO2_VACCC (DNA-directed RNA polymerase 132 kDa polypeptide OS=Vaccinia virus (strain Copenhagen) GN=RPO132 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14 Identity = 65/246 (26.42%), Postives = 114/246 (46.34%), Query Frame = 2 Query: 5 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE--TGMVDQVLLTTNADGLRFVKVRVRSV--RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 PR A KQA+ ++ + ++D +++Y P++P+V ++A+E G + +A+ Y G NQED +I+ + I RG + + ++ E + E+F +R R +Y KL+ +GL + D + + + ++ RD+ IS SE T M + + VKVRV ++ R P +GDKF++R QKGTV + ++P+ ITP Sbjct: 685 PRAILGCAQAKQAISCLSSDIRNKIDNGIHLMY-PERPIVISKALETSKIAANCFGQHVTIALMSYKGINQEDGIIIKKQFIQRGGLDIVTAKKHQVE------IPLENFNNKERD-----RSNAYSKLESNGLVRLNAFLESGDAMARNISSRTLEDD-------FARDNQISFDVSEKYTDMYKSRVERVQVELTDKVKVRVLTMKERRPILGDKFTTRTSQKGTVAYVADETELPYDENGITP 911
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPO2_FOWPV (DNA-directed RNA polymerase 132 kDa polypeptide OS=Fowlpox virus GN=RPO132 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.026e-14 Identity = 68/246 (27.64%), Postives = 116/246 (47.15%), Query Frame = 2 Query: 5 PRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQASRYTRRDHSISLRHSE--TGMVDQVLLTTNADGLRFVKVRVRSV--RIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVESITP 730 PR A KQA+ ++ + ++D ++LY P++P+V ++A E G + +VA+ Y G NQED +++ + I+RG + + ++ E + E+F +R N+ +Y KLD +GL + D I + + D+ D+ IS SE T M + D VKVRV ++ R P +GDKF+SR QKGT+ ++ ++P+ +TP Sbjct: 677 PRAILGCAQAKQAISCLSSDLRNKIDNGIHLLY-PERPIVLSKATETSKIAINCFGQHVLVALMSYKGMNQEDGIVVKREFIERGGLDIVTAKKHQVE------IPIENFKNRERINST-----AYSKLDINGLVRLNAFLEPGDAIAKNISSRTLDDD-------FVADNQISFDISEKYTDMYMSRVERVQVDLTDKVKVRVLTMKERRPIMGDKFTSRTSQKGTIAYIASESELPYDKNGVTP 903
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPOB_TREPA (DNA-directed RNA polymerase subunit beta OS=Treponema pallidum GN=rpoB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14 Identity = 58/204 (28.43%), Postives = 93/204 (45.59%), Query Frame = 2 Query: 158 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDE--EKKMGT-LVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTRRDHSISLRHSETGMVDQVLLTTNADG-------LRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 709 +L G N +V ++GYN ED+++++ + F S+ + + E E K+G+ + D N D LD +G+ G++V DV+IGK TP S+ E G+ ++ R D S+ + H G V V ++G VKV + + R + GDK + RHG KG V +EDMP+ Sbjct: 761 ELALGRNILVGFVPWNGYNYEDAILISHRVVKEDMFTSVHIKEFSTEVRETKLGSERMTNDIPNKSEKNL--------DNLDAEGIIRIGSKVRAGDVLIGKITPKSESETTPEFRLLNSIFGEKAKEVR-DSSLRVPHGVEGTVIDVQRLRRSEGDDLNPGVSEVVKVLIATKRKLREGDKMAGRHGNKGIVARILPEEDMPY 955
BLAST of CN188447 vs. ExPASy Swiss-Prot
Match: RPOB_LACS1 (DNA-directed RNA polymerase subunit beta OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rpoB PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.952e-14 Identity = 55/201 (27.36%), Postives = 89/201 (44.28%), Query Frame = 2 Query: 158 QLPAGINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQ----------GQASRYTRRDHSISLRHSETGMVDQVLLTTNADGLRF-------VKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPW 709 +L G N ++A + GYN ED++ +N+ + + S+ + E + L E+ R + + LD+ G+ G V D+++GK TP E G+ +R R D S+ + H G+V V + T G V+V + R Q+GDK + RHG KGTV + +EDMP+ Sbjct: 753 ELALGQNPLIAFMTWDGYNFEDAIAINERLVKEDVYTSIHIEEHESEARDT-KLGPEEITR----EIPNVGEDALKNLDEFGIIRIGAEVKDGDILVGKVTPKGVTELSAEERLLHAIFGEKAREVR-DTSLRVPHGAGGIVQDVKIFTREGGDELSPGVNMMVRVYIAQKRKLQVGDKMAGRHGNKGTVSVVIPEEDMPF 947 The following BLAST results are available for this feature:
BLAST of CN188447 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 343
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188447 ID=CN188447; Name=CN188447; organism=Citrus sinensis; type=EST; length=733bpback to top |