CK939873

Overview
NameCK939873
Unique NameCK939873
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_BOVIN (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.996e-17
Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 2
Query:  203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745
            E KK+ + +      +A+  + +M+ E R    + +  ++SKLR Y+ DL  L  EV R T       AR ++     A   + M     QR  LL  T+ LN +T  I+ S R   ET+++G  I+++L +QR  L    + L    +N+SKS+KIL +MSR+++ +K ++ SI+ +L  AIL
Sbjct:   39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RSTPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLELAIL 220          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_RAT (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.219e-17
Identity = 62/188 (32.98%), Postives = 100/188 (53.19%), Query Frame = 2
Query:  203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 748
            E KK+ + +      +A+  + +M+ E R      +  ++SKLR Y+ DL  L  EV R T        R +L      LE+   + +     QR  LL  TE LN +T  I+ S R   ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +MSR++  +K ++ S+I VL  AIL+
Sbjct:   39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIIVLELAILV 221          
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17
Identity = 61/188 (32.45%), Postives = 100/188 (53.19%), Query Frame = 2
Query:  203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 748
            E KK+ + +      +A+  + +M+ E R      +  ++SKLR Y+ DL  L  EV R T        R +L      LE+   + +     QR  LL  TE LN +T  I+ S R   ET+++G  I+++L +QR  L    + L   ++N+SKS+KIL +MSR++  +K ++ S+I +L  AIL+
Sbjct:   39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV-RSTPLTAAPGGRGDLKYGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIILLELAILV 221          
The following BLAST results are available for this feature:
BLAST of CK939873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
VTI1B_BOVIN3.996e-1732.61Vesicle transport through interaction with t-SNARE... [more]
VTI1B_RAT5.219e-1732.98Vesicle transport through interaction with t-SNARE... [more]
VTI1B_MOUSE8.902e-1732.45Vesicle transport through interaction with t-SNARE... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_D05 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_D05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939873 ID=CK939873; Name=CK939873; organism=Citrus sinensis; type=EST; length=751bp
GGGGATGCTCAAAAAGACAGAATATTTCACCTGGATCTTCCGGTGCCCAA
TTTCCTTCTCACCGATCGTCTCCACGATCACTTCCCGTTGGTGAGGGATT
CGGGCGAAGATGAGTCAGGTGTTTGAAGGATACGAGCGCCAATACTGCGA
GCCCTCTGCTGGATTATCGCGGAAGTGCACGGCGGCAAGTGCTCTTGATG
GAGAGCTGAAAAAGCAGAAACTTTCTGAAATTAAAACTGGATTGGATGAT
GCTGATGCTCTGATTCGGAAAATGGACCTAGAGGCAAGAAGTTTGCAGCC
GAATGTGAAGGCAATGCTTCTGTCTAAGTTAAGAGAATACAAAACCGATT
TGAACAATTTGAAAAATGAAGTGAAAAGAGTCACATCAGGTAATGTCAAC
CAGGCTGCCCGCGATGAGTTGTTGGAGTCGGGAATGGCAGATGCAATGAT
GGTATCGGCTGATCAAAGGGGAAGATTGTTGATGTCAACAGAGAGACTAA
ACCACTCGACAGACCGAATTAAGGAGAGTAGAAGAACAATGCTGGAAACG
GAAGAGCTTGGAGTCTCGATCCTGCAAGATTTGCATCAACAACGCCAATC
TCTTCTGCACGCTCATAACACGCTCCATGGGGTGGATGACAATATTAGCA
AAAGCAAGAAGATCCTGACAGCCATGTCAAGAAGGATGAGCAGGGACAAA
TGGATCATGGGCTCCATAATCTCAGTTCTTGTCTTTGCTATTTTACTTAT
A
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