CK939873
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_BOVIN (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 3.996e-17 Identity = 60/184 (32.61%), Postives = 99/184 (53.80%), Query Frame = 2 Query: 203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDELLESGMA---DAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAIL 745 E KK+ + + +A+ + +M+ E R + + ++SKLR Y+ DL L EV R T AR ++ A + M QR LL T+ LN +T I+ S R ET+++G I+++L +QR L + L +N+SKS+KIL +MSR+++ +K ++ SI+ +L AIL Sbjct: 39 EEKKKLIRDFDEKQQEANETLAEMEEELRYAPLSFRNPMMSKLRTYRKDLAKLHREV-RSTPLTATPGARGDMKYGTYAVENEHMNRLQSQRALLLQGTDSLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTSENLSKSRKILRSMSRKVTTNKLLL-SIVILLELAIL 220
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_RAT (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 5.219e-17 Identity = 62/188 (32.98%), Postives = 100/188 (53.19%), Query Frame = 2 Query: 203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 748 E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R T R +L LE+ + + QR LL TE LN +T I+ S R ET+++G I+++L +QR L + L ++N+SKS+KIL +MSR++ +K ++ S+I VL AIL+ Sbjct: 39 EEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNSMMSKLRNYRKDLAKLHREV-RSTPLTATPGGRGDLKFGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIAAETDQIGSEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIIVLELAILV 221
BLAST of CK939873 vs. ExPASy Swiss-Prot
Match: VTI1B_MOUSE (Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.902e-17 Identity = 61/188 (32.45%), Postives = 100/188 (53.19%), Query Frame = 2 Query: 203 ELKKQKLSEIKTGLDDADALIRKMDLEARSLQPNVKAMLLSKLREYKTDLNNLKNEVKRVTSGNVNQAARDEL------LESGMADAMMVSADQRGRLLMSTERLNHSTDRIKESRRTMLETEELGVSILQDLHQQRQSLLHAHNTLHGVDDNISKSKKILTAMSRRMSRDKWIMGSIISVLVFAILL 748 E KK+ + + +A+ + +M+ E R + ++SKLR Y+ DL L EV R T R +L LE+ + + QR LL TE LN +T I+ S R ET+++G I+++L +QR L + L ++N+SKS+KIL +MSR++ +K ++ S+I +L AIL+ Sbjct: 39 EEKKKLVRDFDENQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHREV-RSTPLTAAPGGRGDLKYGTYTLENEHLNRLQ---SQRALLLQGTESLNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMSRKVITNKLLL-SVIILLELAILV 221 The following BLAST results are available for this feature:
BLAST of CK939873 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939873 ID=CK939873; Name=CK939873; organism=Citrus sinensis; type=EST; length=751bpback to top |