CN188416

Overview
NameCN188416
Unique NameCN188416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 3.311e-41
Identity = 84/156 (53.85%), Postives = 102/156 (65.38%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKE-GNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   HED +HD  +D+YGKRLAT SSD +IKI  +  + +  L ATL GH GP+WQVAWAHPKFGSILASCSYDG+V+IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +GV S    P
Sbjct:    4 IGNAHEDLIHDAVLDYYGKRLATCSSDKTIKIYDIEGTENYKLTATLTGHEGPIWQVAWAHPKFGSILASCSYDGKVLIWKEQQDTQQWSIIAEHTIHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFD-AHAIGVNSASWAP 158          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_ASPNC (Protein transport protein sec13 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec13 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 6.777e-41
Identity = 84/168 (50.00%), Postives = 110/168 (65.48%), Query Frame = 1
Query:  184 MPAQKIE-TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN--------DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            M AQ I  +GH++ +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH G VW VAWAHPKFG+ILAS SYDG+V+IW+E +QN         WT+   F+ H +SVN ++WAPHE G  LAC SSDG++SV     D  W T +I  AH +GV S+   P
Sbjct:    1 MAAQVISNSGHDEMIHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGGAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAP 166          

HSP 2 Score: 22.7126 bits (47), Expect = 6.777e-41
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA APG+
Sbjct:  163 SWAPAAAPGS 172          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_EMENI (Protein transport protein sec13 OS=Emericella nidulans GN=sec13 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.830e-41
Identity = 81/160 (50.62%), Postives = 106/160 (66.25%), Query Frame = 1
Query:  205 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND--------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +     + + TLKGH GPVW V WAHPKFG+ILAS SYDG+V+IW+E +Q+         WT+   F+ H +SVN I+WAPHE G  LAC SSDG++SV     D  W T +I  AH +GV S+   P
Sbjct:   10 SGHDDMIHDAGLDYYGRRLATCSSDKTIKIFEIEGDTHKLVETLKGHEGPVWCVEWAHPKFGTILASSSYDGKVLIWREQHQSSTAPIGSGAWTKVFDFSLHTASVNMISWAPHETGCLLACASSDGHVSVL-EFRDNSW-THQIFHAHGMGVNSISWAP 167          

HSP 2 Score: 21.557 bits (44), Expect = 8.830e-41
Identity = 7/10 (70.00%), Postives = 9/10 (90.00%), Query Frame = 2
Query:  650 SWAPAMAPGA 679
            SWAPA +PG+
Sbjct:  164 SWAPAASPGS 173          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 6.244e-40
Identity = 79/154 (51.30%), Postives = 100/154 (64.94%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H+D +HD  +D+YG+RLAT SSD +IKI  +     + + TL GH GPVWQVAWAHPKFG ILASCSYDG+V+IWKE N   W +    + H++SVNS++WAPHE G  L C SSDG IS+     DGG     + Q H +GV +    P
Sbjct:    4 IGNAHDDLIHDAVLDYYGRRLATCSSDKTIKIFEIDGENQRLVETLIGHEGPVWQVAWAHPKFGVILASCSYDGKVLIWKEDN-GVWNKVAEHSVHQASVNSVSWAPHEYGPVLLCASSDGKISI-VEFKDGGALEPIVIQGHAIGVNAASWAP 155          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.817e-39
Identity = 81/156 (51.92%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H+D +HD  +D+YGKRLAT SSD +IKI  L  + +  L  TL GH GPVWQV+WAHPKFGSILASCSYDG+ +IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G  S    P
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKIFDLDGTDNYKLITTLTGHEGPVWQVSWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTVHQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFNDDGTTSHVIFD-AHAIGANSATWAP 158          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_DEBHA (Protein transport protein SEC13 OS=Debaryomyces hansenii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.373e-39
Identity = 81/156 (51.92%), Postives = 100/156 (64.10%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLA-TLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H+D +HD  +D+YGKRLAT SSD +IK+  +  + +  L  TL GH GPVWQVAWAHPKFGSILASCSYDG+ +IWKE  +   W+       H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +GV S    P
Sbjct:    4 IGNAHDDLIHDAVLDYYGKRLATCSSDKTIKLFEVEGTENYKLVETLIGHEGPVWQVAWAHPKFGSILASCSYDGKALIWKEQPETQQWSIIAEHTVHQASVNSVSWAPHELGAILLCTSSDGKVSVVDFNDDGTTSHIIFD-AHAIGVNSASWAP 158          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.099e-39
Identity = 77/152 (50.66%), Postives = 101/152 (66.45%), Query Frame = 1
Query:  205 TGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +GH+D +HD  +D+YG+RLAT SSD +IKI  +   + + + TLKGH G VW VAWAHPK+G+ILAS  YDG+V+IW+E     W +   F  HK+SVN ++W+PHE G  LAC SSDGN+SV     D  W+   I  AH +GV SV   P
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNILASAGYDGKVLIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVL-EFKDNSWE-HNIFHAHGLGVNSVSWAP 159          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.286e-39
Identity = 80/156 (51.28%), Postives = 99/156 (63.46%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHL-ATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQ-NDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H D +HD  +D+YGKRLAT SSD SI I  +  + S  L +TL GH GPVWQV+WAHPKFGSILASCS+DG+ +IWKE  +   W+     + H++SVNS++WAPHELG  L C SSDG +SV     DG       D AH +G  S    P
Sbjct:    4 IGNAHNDLIHDAVLDYYGKRLATCSSDKSINIFDIDGTESYKLVSTLTGHDGPVWQVSWAHPKFGSILASCSFDGKALIWKEQPETQQWSIIAEHSVHQASVNSVSWAPHELGAVLLCASSDGKVSVVDFNDDGTTSHVVFD-AHAIGANSASWAP 158          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.178e-38
Identity = 78/155 (50.32%), Postives = 98/155 (63.23%), Query Frame = 1
Query:  196 KIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +I   H D +HD  +D+YGK+LAT SSD +IKI  +   + + + TL GH GPVW+V WAHPKFG+ILASCSYDG+VIIWKE N   W+Q      H +SVNS+ WAPHE G  L   SSDG +SV     + G  T  I  AH +GV +    P
Sbjct:    3 EIANAHNDLIHDAVLDYYGKKLATCSSDKTIKIFEVEGESHKLVDTLVGHEGPVWRVDWAHPKFGTILASCSYDGKVIIWKEENDR-WSQIAVHAVHTASVNSVQWAPHEYGALLLAASSDGKVSV-VEFKENGTATPLIFDAHAIGVNAASWAP 155          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEC13_ASHGO (Protein transport protein SEC13 OS=Ashbya gossypii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.623e-38
Identity = 77/154 (50.00%), Postives = 97/154 (62.99%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            I   H + +HD  +D+YGKRLAT SSD +I+I  +   + + + +L GH GPVWQV WAHPKFG ILASCSYDG+V+IWKE N   W+Q   +  H +SVNS+ WAPHE G  L C SSDG  SV     +G      ID AH +GV +    P
Sbjct:    4 ITNAHTELIHDAVLDYYGKRLATCSSDKTIQIFEVDGDSHKLVDSLHGHEGPVWQVDWAHPKFGVILASCSYDGKVLIWKEEN-GRWSQIAAYEVHSASVNSVKWAPHEYGPLLLCSSSDGKFSVVEFKENGTTSPIIID-AHAIGVNAACWAP 155          
The following BLAST results are available for this feature:
BLAST of CN188416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SEC13_LODEL3.311e-4153.85Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_ASPNC6.777e-4150.00Protein transport protein sec13 OS=Aspergillus nig... [more]
SEC13_EMENI8.830e-4150.63Protein transport protein sec13 OS=Emericella nidu... [more]
SEC13_PICPG6.244e-4051.30Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_CANAL1.817e-3951.92Protein transport protein SEC13 OS=Candida albican... [more]
SEC13_DEBHA2.373e-3951.92Protein transport protein SEC13 OS=Debaryomyces ha... [more]
SEC13_NEUCR3.099e-3950.66Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_PICST5.286e-3951.28Protein transport protein SEC13 OS=Pichia stipitis... [more]
SC131_CANGA1.178e-3850.32Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_ASHGO2.623e-3850.00Protein transport protein SEC13 OS=Ashbya gossypii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188416 ID=CN188416; Name=CN188416; organism=Citrus sinensis; type=EST; length=680bp
ATGTCGACCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAGCCGG
TGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGGAGCT
GAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTTGAAG
TTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAAAAAT
TGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTCTATG
GAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAATTGGT
TTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATAGAGG
TCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATCCTTG
CTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAATCAA
AATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTGTCAA
CTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGTGGAT
CTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGGCTGG
GATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTGTTTT
CATGGGCCCCGGCAATGGCTCCTGGTGCTT
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