CN188416

Overview
NameCN188416
Unique NameCN188416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEH1_YEAST (Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SEH1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.668e-22
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:  193 QKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSAS--QHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQND------WTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA 582
            Q  ++GH+D VHDV  DFYG+ +AT SSD  IK+  L    S  +   + + H   +  + WA P++G I+AS SYD  V +W+E    +      W +  T ND K S+ S+ +AP  LGL LAC  +DG + ++ A
Sbjct:    2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: SEH1_SCHPO (Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.015e-18
Identity = 48/141 (34.04%), Postives = 76/141 (53.90%), Query Frame = 1
Query:  190 AQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRG--PVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQN----DWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADG 594
            A  I+T H+D V+DV  DFYG+R+ + S+D  +K+   ++       T +   G   + +VAWAHP FG +LA CS D  V I++E  +N     W +     D +S+V  I++ P + G  LA  S+D  + ++ A   G
Sbjct:    6 ATTIQTNHQDLVNDVTYDFYGRRMVSCSADQRVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAVLDISFCPFQHGCKLAAVSADATLRIYEAMEPG 146          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.287e-16
Identity = 54/158 (34.18%), Postives = 80/158 (50.63%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA-TADGGWDTTRIDQAHPVGVTSV-FMGPGN 666
            +  GH  T+ DVA    G+ LA+AS D+++ I    +   +  ATL+GH   V  V+W+  K GS+LA+CS D  V +W+   ++++  A   N H   V  + W PHE    LA  S D  I ++    AD  W +     +H   V S+ F G GN
Sbjct:   55 LSDGHSRTIRDVAWSPCGQYLASASFDATVAIWDKKSGEFECNATLEGHENEVKSVSWS--KSGSLLATCSRDKSVWVWEVAQEDEYECAAVLNTHTQDVKKVEWHPHE--DILASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISFDGSGN 208          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_CULQU (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Culex quinquefasciatus GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.023e-14
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = 1
Query:  184 MPAQKIETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA-TADGGWDTTRIDQAHPVGVTSV 648
            +P   +  GH  T+ DVA    G+ LA+AS D+++ I    +   +  ATL+GH   V  V+W+  K G++LA+CS D  V IW+   ++++  A   N H   V  + W P+E    LA  S D  I ++    AD  W +     +H   V S+
Sbjct:   50 VPKTVLSDGHTRTIRDVAWSPCGRFLASASFDATVAIWDRRSGEFECNATLEGHENEVKSVSWS--KSGALLATCSRDKSVWIWEVAQEDEYECAAVLNTHSQDVKKVEWHPNE--DVLASASYDNTIQLYREDLADSDWSSFDTLASHDSTVWSI 201          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 49/151 (32.45%), Postives = 74/151 (49.01%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  K G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +A D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSI 200          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPS (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila pseudoobscura pseudoobscura GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +  D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVW--HPTKDILASASYDNTIKMFAESQLDSDWDCTATLSSHTSTVWSI 200          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROPE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila persimilis GN=Ciao1 PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 47/151 (31.13%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +  D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVW--HPTKDILASASYDNTIKMFAESQLDSDWDCTATLSSHTSTVWSI 200          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROAN (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila ananassae GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.982e-13
Identity = 49/152 (32.24%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ ++     G+ LA+AS D +  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W P  EL   LA  S D  I +F   A D  WD      +H   V S+
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDGTTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTKEL---LASASYDNTIKMFAEDALDSDWDCVATLSSHTSTVWSI 200          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROVI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila virilis GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 49/151 (32.45%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ +V     G+ LA+AS D++  I     S  +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F  +A D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIW----SKHECTATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVW--HPTKEVLASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSI 196          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 51/155 (32.90%), Postives = 72/155 (46.45%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++ GH+ TV  VA    G  LA+AS D++  I    N   + L  L+GH   V  VAWA    G++LA+CS D  V IW+   +N++      N H   V  + W P  EL   LA  S D N+ V+    D  W+     + H   V  +   P
Sbjct:   56 LQDGHQRTVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNLLATCSRDKSVWIWEVDEENEYECVSVVNSHTQDVKHVVWHPTQEL---LASCSYDNNVCVY-KEEDDDWECRATLEGHTSTVWGLTFDP 204          
The following BLAST results are available for this feature:
BLAST of CN188416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
SEH1_YEAST7.668e-2238.41Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SE... [more]
SEH1_SCHPO3.015e-1834.04Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=s... [more]
CIAO1_AEDAE6.287e-1634.18Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CULQU2.023e-1432.05Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROWI3.450e-1432.45Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPS4.982e-1331.13Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROPE4.982e-1331.13Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROAN4.982e-1332.24Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROVI1.110e-1232.45Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1B_SALSA1.450e-1232.90Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188416 ID=CN188416; Name=CN188416; organism=Citrus sinensis; type=EST; length=680bp
ATGTCGACCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAGCCGG
TGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGGAGCT
GAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTTGAAG
TTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAAAAAT
TGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTCTATG
GAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAATTGGT
TTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATAGAGG
TCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATCCTTG
CTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAATCAA
AATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTGTCAA
CTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGTGGAT
CTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGGCTGG
GATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTGTTTT
CATGGGCCCCGGCAATGGCTCCTGGTGCTT
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