CN188416

Overview
NameCN188416
Unique NameCN188416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAH 627
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F     D  WD T    +H
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKDVLASASYDNTIKMFAEEPIDNDWDCTATLTSH 193          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila sechellia GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAH 627
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F     D  WD T    +H
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKDVLASASYDNTIKMFAEEPIDNDWDCTATLTSH 193          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROMO (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila mojavensis GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ +V     G+ LA+AS D++  I     S  +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I ++  +A D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIW----SKHECTATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVW--HPTKEILASASYDNTIKMYAESALDSDWDCTATLSSHTSTVWSI 196          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROME (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila melanogaster GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 45/144 (31.25%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAH 627
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I +F     D  WD T    +H
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKDILASASYDNTIKMFAEEPIDNDWDCTATLTSH 193          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROER (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.472e-12
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTA-TADGGWDTTRIDQAH 627
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I ++     D  WD T    +H
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVW--HPTKEVLASASYDNTIKMYAEDPVDNDWDCTATLTSH 193          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROYA (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila yakuba GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 44/144 (30.56%), Postives = 69/144 (47.92%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFT-ATADGGWDTTRIDQAH 627
            +  GH+ T+ ++     G+ LA+AS D++  I   S+   +  ATL+GH   V  V+W+  + G +LA+CS D  V IW+    +++  A   N H   V  + W  H     LA  S D  I ++     D  WD T    +H
Sbjct:   54 LSDGHKRTIREIQWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVW--HPTKEILASASYDNTIKMYAEEPIDNDWDCTATLTSH 193          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DANRE (Probable cytosolic iron-sulfur protein assembly protein ciao1 OS=Danio rerio GN=ciao1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.229e-12
Identity = 51/155 (32.90%), Postives = 73/155 (47.10%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +  GH+ TV  VA    GK LA+AS D++  I   ++   + L  L+GH   V  VAWA    GS+LA+CS D  V IW+   ++++      N H   V  + W P  EL   LA  S D  I ++    D  W+     + H   V S+   P
Sbjct:   56 LSDGHQRTVRKVAWSPCGKYLASASFDATTCIWKKTDEDFECLTVLEGHENEVKCVAWA--PSGSLLATCSRDKSVWIWEVDEEDEYECLSVVNSHTQDVKHVVWHPTQEL---LASASYDNKICIY-KEEDDDWECRATLEGHESTVWSLTFDP 204          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DROGR (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila grimshawi GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 48/151 (31.79%), Postives = 73/151 (48.34%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATA-DGGWDTTRIDQAHPVGVTSV 648
            +  GH+ T+ +V     G+ LA+AS D++  I     S  +  ATL+GH   V  V+W+    G +LA+CS D  V IW+    +++  A   N H   V  + W P +    LA  S D  I ++  +A D  WD T    +H   V S+
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIW----SKHECNATLEGHENEVKSVSWSQS--GGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPSK--EILASASYDNTIKMYAESALDSDWDCTATLSSHTSTVWSI 196          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_RAT (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Rattus norvegicus GN=Ciao1 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 45/154 (29.22%), Postives = 70/154 (45.45%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +  GH+ TV  VA    G  LA+AS D++  I   +    + + TL+GH   V  VAWA    G++LA+CS D  V +W+   ++++      N H   V  + W P +    LA  S D  + ++    D  W      + H   V S+   P
Sbjct:   56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYQEEGD-DWVCCATLEGHESTVWSIAFDP 204          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_HUMAN (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Homo sapiens GN=CIAO1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 45/154 (29.22%), Postives = 70/154 (45.45%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            +  GH+ TV  VA    G  LA+AS D++  I   +    + + TL+GH   V  VAWA    G++LA+CS D  V +W+   ++++      N H   V  + W P +    LA  S D  + ++    D  W      + H   V S+   P
Sbjct:   56 LSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEED-DWVCCATLEGHESTVWSLAFDP 204          
The following BLAST results are available for this feature:
BLAST of CN188416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CIAO1_DROSI2.472e-1231.25Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROSE2.472e-1231.25Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROMO2.472e-1231.79Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROME2.472e-1231.25Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROER2.472e-1230.56Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROYA3.229e-1230.56Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DANRE3.229e-1232.90Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROGR5.508e-1231.79Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_RAT2.734e-1129.22Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_HUMAN6.090e-1129.22Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188416 ID=CN188416; Name=CN188416; organism=Citrus sinensis; type=EST; length=680bp
ATGTCGACCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAGCCGG
TGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGGAGCT
GAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTTGAAG
TTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAAAAAT
TGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTCTATG
GAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAATTGGT
TTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATAGAGG
TCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATCCTTG
CTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAATCAA
AATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTGTCAA
CTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGTGGAT
CTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGGCTGG
GATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTGTTTT
CATGGGCCCCGGCAATGGCTCCTGGTGCTT
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