CN188416

Overview
NameCN188416
Unique NameCN188416
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length680
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3944 contig Csv1_Contig3944:44..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_DICDI (Probable cytosolic iron-sulfur protein assembly protein OS=Dictyostelium discoideum GN=ciao1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 45/134 (33.58%), Postives = 65/134 (48.51%), Query Frame = 1
Query:  208 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQ--HLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWD 603
            GHE TV  VA    G+ LA AS D+S  I   S    +  H+++L+GH   V  VAW     G++LA+CS D  + IW+  + ND+      + H   +  + W P+E    L   SS  +   F    DG W+
Sbjct:   67 GHEKTVRRVAWSPCGRFLAGASFDASTSIWEKSKDELEFTHVSSLEGHTYEVKSVAW--DSTGTLLATCSRDKSIWIWQMEDDNDFECLSINSGHGQDIKCVLWHPNE---ELLASSSYDDTIKFWKDIDGDWE 195          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIO1A_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 49/155 (31.61%), Postives = 70/155 (45.16%), Query Frame = 1
Query:  199 IETGHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAP-HELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            ++ GH+  V  VA    G  LA+AS D++  I    N   + L  L+GH   V  VAWA    G+ LA+CS D  V IW+   ++++      N H   V  + W P  EL   LA  S D N+ V+    D  W+     + H   V  +   P
Sbjct:   56 LQDGHQRAVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNQLATCSRDKSVWIWEVDEEDEYECVSVVNSHTQDVKHVVWHPTQEL---LASCSYDNNVCVY-KEEDDDWECRATLEGHTSTVWGLTFDP 204          
BLAST of CN188416 vs. ExPASy Swiss-Prot
Match: CIAO1_BOVIN (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Bos taurus GN=CIAO1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 45/151 (29.80%), Postives = 69/151 (45.70%), Query Frame = 1
Query:  208 GHEDTVHDVAMDFYGKRLATASSDSSIKIIGLSNSASQHLATLKGHRGPVWQVAWAHPKFGSILASCSYDGQVIIWKEGNQNDWTQAHTFNDHKSSVNSIAWAPHELGLSLACGSSDGNISVFTATADGGWDTTRIDQAHPVGVTSVFMGP 660
            GH+ TV  VA    G  LA+AS D++  I   +    + + TL+GH   V  VAWA    G++LA+CS D  V +W+   ++++      N H   V  + W P +    LA  S D  + ++    D  W      + H   V S+   P
Sbjct:   59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNEDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEED-DWVCCATLEGHESTVWSLAFDP 204          
The following BLAST results are available for this feature:
BLAST of CN188416 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
CIAO1_DICDI6.090e-1133.58Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1A_SALSA7.954e-1131.61Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_BOVIN7.954e-1129.80Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188416 ID=CN188416; Name=CN188416; organism=Citrus sinensis; type=EST; length=680bp
ATGTCGACCACCACGCAAAAAGCCTAAAAACGTTTATTACTCTCAGCCGG
TGCTACTGGTCGGTCTTCGAATCCGCTCCTCTCTTAAGAAATTTGGAGCT
GAGAACATAAGATAAAAAGGAGCTACGAACTAGTGATCAAGGAGTTGAAG
TTTGAGGGGTAAAATAAAGAAATATAAAGTAAGATGCCTGCACAAAAAAT
TGAAACTGGTCATGAAGACACTGTCCATGATGTAGCCATGGATTTCTATG
GAAAACGTTTAGCCACAGCTTCGTCTGACTCCAGCATTAAGATAATTGGT
TTAAGCAACTCTGCTTCCCAGCACCTTGCTACATTGAAAGGCCATAGAGG
TCCTGTTTGGCAAGTTGCATGGGCACACCCCAAGTTTGGGTCAATCCTTG
CTTCCTGTTCCTATGATGGCCAAGTTATTATCTGGAAGGAAGGTAATCAA
AATGATTGGACACAGGCTCATACTTTTAATGATCATAAATCATCTGTCAA
CTCCATTGCGTGGGCACCTCATGAACTTGGTCTCTCCTTGGCTTGTGGAT
CTTCTGATGGGAACATCTCAGTCTTTACTGCTACAGCTGATGGTGGCTGG
GATACTACCAGGATAGACCAGGCCCATCCAGTCGGAGTAACATCTGTTTT
CATGGGCCCCGGCAATGGCTCCTGGTGCTT
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