CN188415

Overview
NameCN188415
Unique NameCN188415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_SCHPO (Protein transport protein sec13 OS=Schizosaccharomyces pombe GN=sec13 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 68/151 (45.03%), Postives = 90/151 (59.60%), Query Frame = -2
Query:  289 AHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGE-QWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQ 729
            AH  G  +V W+P    G++VG       +KLA+ GCDN VK+W    G+        L  H DW R VAWAP++GL K+ +ASASQD  V IWT  KEG+  W+   L + K P   W VSWSL+GN+LAV+  +N V L+KE+   +WQ
Sbjct:  143 AHEPGCNAVCWSPPSLSGSVVGQSPAAGPKKLATAGCDNLVKIWAFDAGVNNWILEDTLAGHVDWTRDVAWAPSVGLTKTYLASASQDKNVFIWT--KEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCGDNKVYLFKES-QNKWQ 290          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_PHANO (Protein transport protein SEC13 OS=Phaeosphaeria nodorum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.963e-25
Identity = 70/159 (44.03%), Postives = 91/159 (57.23%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALVGL--GLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I QA   GV SVSWAPA+APG +V          ++  + G D  VK+W              L  H+DWVR VAW+P + L KS IASASQD TV IWT + +   W+  VL +     W VSWSL+GN+LAV+  +N V+LWKE + G W+ V  +E
Sbjct:  146 IFQACGSGVNSVSWAPAVAPGQVVSASGNQAGAARRFVTGGSDCQVKLWDFSAETGSWQSTQILTGHTDWVRDVAWSPTV-LSKSYIASASQDKTVRIWT-SSDLRDWKSTVL-NVDAVAWRVSWSLSGNVLAVSTGDNRVSLWKERLSGGWECVKTIE 301          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_CANAL (Protein transport protein SEC13 OS=Candida albicans GN=SEC13 PE=1 SV=2)

HSP 1 Score: 115.546 bits (288), Expect = 2.963e-25
Identity = 65/161 (40.37%), Postives = 96/161 (59.63%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I  AH +G  S +WAP            L   +++ SCG DN  K+WK    N  +  +    L+ H+DWVR VAW+P+  L +S IA+ASQD TV+IWT  ++G +W+ ++L + K P   W  SWSL+GN+LAV+  +N V+LWKE + G+W+    V+
Sbjct:  143 IFDAHAIGANSATWAPVSTSSK--DSAALKQQRRIVSCGSDNLAKIWKYDAANNTYVEEA--KLEGHTDWVRDVAWSPS-NLIRSYIATASQDRTVLIWTQDRDG-KWQKQLLTEEKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEVD 297          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_KLULA (Protein transport protein SEC13 OS=Kluyveromyces lactis GN=SEC13 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.053e-25
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPA----MAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I  AH +G  +  WAPA     +     G      V++  + G DN VK+WK  +          L+ HSDWVR VAW+P + L +S +AS SQD T +IWT   + + W+  +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+    V
Sbjct:  140 IIDAHSIGANTACWAPATLQQQSNQGTSGSASPQQVRRFVTGGADNLVKIWKYNSDAATYLLEHTLEGHSDWVRDVAWSPTV-LSRSYLASVSQDRTCIIWTQDSKEDTWKKTLLKEDKFPDVLWRASWSLSGNILALSCGDNTVTLWKENLEGKWEPAGQV 300          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_ASHGO (Protein transport protein SEC13 OS=Ashbya gossypii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I  AH +GV +  WAPA              ++++A+ G DN VK+WK             L  H+DWVR VAW+P++ LP++ +A+ SQD T +IWT       W   +LK+ K P  +W  SWSL+GN+LA++  +N VTLWKE ++G+W+  + +E
Sbjct:  140 IIDAHAIGVNAACWAPATIED---DGQQSQHLRRIATGGADNLVKIWKYNPEANTYLLEDTLAAHADWVRDVAWSPSV-LPRAYLATVSQDRTCIIWTQENNQGPWTKTLLKEDKFPDVLWRASWSLSGNILALSGGDNKVTLWKENLEGKWESAAEIE 294          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_PICST (Protein transport protein SEC13 OS=Pichia stipitis GN=SEC13 PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 64/159 (40.25%), Postives = 95/159 (59.75%), Query Frame = -2
Query:  274 AHPVGVTSVSWAPAMAPGA--LVGLGLLDPVQKLASCGCDNTVKVWKM--YNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKDFKTP--VWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 729
            AH +G  S SWAP  +  +        L   ++  +CG DN  K+WK    N  +  +    L+ H+DWVR VAW+P++ L ++ IA+ASQD TV+IWT  K G +W+ ++L + K P   W  SWSL+GN+LAV+  +N V+LWKE + G+W+    V
Sbjct:  146 AHAIGANSASWAPLSSTPSPNQKDAASLKQQRRFVTCGSDNLAKIWKYDAANNTYVEEA--RLEGHTDWVRDVAWSPSM-LVRTYIATASQDRTVLIWTQDKAG-KWQKQLLTEDKFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEV 300          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_DEBHA (Protein transport protein SEC13 OS=Debaryomyces hansenii GN=SEC13 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.278e-24
Identity = 63/159 (39.62%), Postives = 95/159 (59.75%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I  AH +GV S SWAP ++     G    + +++  +CG DN  K+WK  +          L+ H+DWVR V W+P++ L +S IA+ASQD TV+IW+    G+ W+ ++L +  F    W  SWSL+GN+LAV+  +N V+LWKE + G+W+    VE
Sbjct:  143 IFDAHAIGVNSASWAP-LSNNNTKGKDT-NSIRRFVTCGSDNLAKIWKFDSSKNAYIEEAVLEGHTDWVRDVCWSPSI-LIRSYIATASQDRTVLIWSQDNNGK-WQKQLLTEEMFPDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEVE 297          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.587e-24
Identity = 63/158 (39.87%), Postives = 87/158 (55.06%), Query Frame = -2
Query:  274 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL--KDFKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVV 738
            I  AH +GV + SWAPA   G          V++  + G DN VK+W+             L+ HSDWVR VAW+P++ L +S IAS SQD T  IWT       W    L  ++F   +W  SWSL+GN+LA++  +N VTLWKE ++G+W+    V
Sbjct:  140 IFDAHAIGVNAASWAPATVEGGNNPGEAPKEVRRFVTGGADNLVKIWRYNPETQSYLVEDTLEGHSDWVRDVAWSPSV-LLRSYIASVSQDRTCNIWTQEDNTGPWVKTQLTPEEFPDVLWRASWSLSGNILAISGGDNKVTLWKENLNGKWESAGEV 296          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 62/159 (38.99%), Postives = 89/159 (55.97%), Query Frame = -2
Query:  271 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADANN-VTLWKEAVDGEWQQVSVVE 738
            I +AH +GV S SWAP         +    PV++  + G DN  KVW +            L+ H+DWVR V W+P+  L +S IA+ASQD TV+IW    EG+ W+ + L +  F    W  SWS +GN+LAV+  +N V+LWKE + G+W+    V+
Sbjct:  142 IFEAHKIGVNSASWAP---------VDTKSPVRRFVTGGSDNLAKVWSLDASKSTYVEEAKLEGHTDWVRDVCWSPS-ALVRSYIATASQDRTVLIWHQDGEGK-WQKQKLTEELFPDVCWRCSWSFSGNILAVSGGDNKVSLWKENLQGKWESAGEVD 289          
BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SEC13_CRYNE (Protein transport protein SEC13 OS=Cryptococcus neoformans GN=SEC13 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.066e-22
Identity = 63/167 (37.72%), Postives = 85/167 (50.90%), Query Frame = -2
Query:  280 AHPVGVTSVSWAPAMAPGALVGLGL-------LDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTCAKEGEQWEGRVL---------KDFKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQVS 729
            AH  G  ++SWAP++    + G+         L P ++  + G DN +++W       K      ++ H DWVR VAWAPN+GLP   IASASQD TV+I +       W    L           F   VW VSWSL GN+LAV+  +  V+LWKE V   W+ VS
Sbjct:  170 AHGTGANAISWAPSVL-STVSGVSRSQQPSNSLAPQKRFVTAGSDNLIRIWGFDEEQKKWTEEETIKGHEDWVRDVAWAPNIGLPGMYIASASQDRTVLIHSRPSPSSSWTSAPLLPSLPQSQDPHFPDAVWRVSWSLAGNVLAVSCGDGKVSLWKEGVGKGWECVS 335          
The following BLAST results are available for this feature:
BLAST of CN188415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SEC13_SCHPO4.571e-2645.03Protein transport protein sec13 OS=Schizosaccharom... [more]
SEC13_PHANO2.963e-2544.03Protein transport protein SEC13 OS=Phaeosphaeria n... [more]
SEC13_CANAL2.963e-2540.37Protein transport protein SEC13 OS=Candida albican... [more]
SEC13_KLULA5.053e-2538.89Protein transport protein SEC13 OS=Kluyveromyces l... [more]
SEC13_ASHGO1.470e-2438.36Protein transport protein SEC13 OS=Ashbya gossypii... [more]
SEC13_PICST3.275e-2440.25Protein transport protein SEC13 OS=Pichia stipitis... [more]
SEC13_DEBHA4.278e-2439.62Protein transport protein SEC13 OS=Debaryomyces ha... [more]
SC131_CANGA5.587e-2439.87Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_PICGU2.347e-2238.99Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_CRYNE3.066e-2237.72Protein transport protein SEC13 OS=Cryptococcus ne... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188415 ID=CN188415; Name=CN188415; organism=Citrus sinensis; type=EST; length=739bp
CCCTTTTCAGATAAGAGTTCATATGTAATTTAACAGAAATATTGGCAGTC
ACAACCCTTAACGTATGGATGGAGATTAAGACACCATCATTTGTTCCTGA
ATCTGGCAAGAAAGAATAACAACTAACCAAATACAAATTAAGTATTCAAA
CAAAATCAATCCAACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTA
CTTCCAATAAGTCCAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGG
AAGACACCTTATGTCTGTGGCTCGACTACACTCACTTGTTGCCACTCACC
ATCAACAGCTTCCTTCCACAATGTCACATTATTTGCATCAGCCACAGCCA
ACAAATTTCCAGTCAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAA
TCCTTCAAAACTCGACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCA
AATAACAACTGTCCCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAA
GACCCAAGTTGGGTGCCCATGCCACGCTCCGCACCCAATCACTGTGCATC
TGAAGGGCAGGGAAGCAATCCATCTTCCAAATCCCATTATACATCTTCCA
CACCTTTACAGTATTATCACAACCACAAGAAGCCAATTTCTGAACAGGAT
CCAGTAAGCCCAATCCAACTAAAGCACCAGGAGCCATTGCCGGGGCCCAT
GAAACAGATGTTACTCCGACTGGATGGGCCTGGTCTATC
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