CN188415

Overview
NameCN188415
Unique NameCN188415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188415 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.288e-20
Identity = 60/157 (38.22%), Postives = 89/157 (56.69%), Query Frame = -2 
Query:  283 IDQAHPVGVTSVSWAPAMAPGALVGLGLLDPVQKLASCGCDNTVKVWKMYNGIWKMDCFPALQMHSDWVRSVAWAPNLGLPKSTIASASQDGTVVIWTC--AKEGEQWEGRVLKD--FKTPVWSVSWSLTGNLLAVADAN-NVTLWKEAVDGEWQQV 738
            +D AH  GV S+SWAP M   +         V++  S G DN VK+WK  +          L+ H D V +V W+P   L +S +AS S D   ++WT   + +   W+   + +  F+  + SVSWSL+GNLLAV+D + NVT+WKE+ DG+W++V
Sbjct:  146 LDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWKFDDDQETYVVADTLEGHKDAVTAVDWSPTT-LLQSYVASVSNDKQCLVWTQDHSSKKNDWKKISVNEGKFEQKLGSVSWSLSGNLLAVSDDDKNVTIWKESGDGKWEEV 301
The following BLAST results are available for this feature:
BLAST of CN188415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
SC132_CANGA1.288e-2038.22Protein transport protein SEC13-2 OS=Candida glabr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006A02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188415 ID=CN188415; Name=CN188415; organism=Citrus sinensis; type=EST; length=739bp
CCCTTTTCAGATAAGAGTTCATATGTAATTTAACAGAAATATTGGCAGTC
ACAACCCTTAACGTATGGATGGAGATTAAGACACCATCATTTGTTCCTGA
ATCTGGCAAGAAAGAATAACAACTAACCAAATACAAATTAAGTATTCAAA
CAAAATCAATCCAACCCAAAAAAAAACTAAACCAGGTGTAAGAAAGGCTA
CTTCCAATAAGTCCAAAAGAGAACACAATGATTGTGAAAGGGTAAGTAGG
AAGACACCTTATGTCTGTGGCTCGACTACACTCACTTGTTGCCACTCACC
ATCAACAGCTTCCTTCCACAATGTCACATTATTTGCATCAGCCACAGCCA
ACAAATTTCCAGTCAGTGACCACGAAACACTCCAAACTGGTGTCTTAAAA
TCCTTCAAAACTCGACCCTCCCATTGCTCCCCTTCCTTGGCACAGGTCCA
AATAACAACTGTCCCATCCTGTGATGCACTTGCAATTGTGGATTTTGGAA
GACCCAAGTTGGGTGCCCATGCCACGCTCCGCACCCAATCACTGTGCATC
TGAAGGGCAGGGAAGCAATCCATCTTCCAAATCCCATTATACATCTTCCA
CACCTTTACAGTATTATCACAACCACAAGAAGCCAATTTCTGAACAGGAT
CCAGTAAGCCCAATCCAACTAAAGCACCAGGAGCCATTGCCGGGGCCCAT
GAAACAGATGTTACTCCGACTGGATGGGCCTGGTCTATC
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