CK939859

Overview
NameCK939859
Unique NameCK939859
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CK939859 vs. ExPASy Swiss-Prot
Match: KCS12_ARATH (3-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana GN=KCS12 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.898e-12
Identity = 37/120 (30.83%), Postives = 62/120 (51.67%), Query Frame = 3 
Query:  387 YLVDFSCYKPEESRKCTKRIFMDQSRMTGTFTEENLQFQKKILERSGLGDSTYLPEAVLN-IPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINH 743
            Y++D+ C+KP + R  + +   +             +F  K +  SG+G+ TY P  V       PS+++   E E     +I +L  +  + PKDI IL+VN S+ + TPSL++ +INH
Sbjct:   32 YILDYQCHKPTDDRMVSTQFSGEIIYRNQNLGLTEYKFLLKAIVSSGIGEQTYAPRLVFEGREERPSLQDGISEMEEFYVDSIGKLLERNQISPKDIDILVVNVSMLSSTPSLASRIINH 151
The following BLAST results are available for this feature:
BLAST of CK939859 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
KCS12_ARATH2.898e-1230.833-ketoacyl-CoA synthase 12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004744_F03 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IVF_F03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939859 ID=CK939859; Name=CK939859; organism=Citrus sinensis; type=EST; length=743bp
TTTTTTTTTTTTTTTCTCGTTGGTTTCTCTGTCGAGATTCAAGCGATCCG
CCGGTGGGTTTTGACAATCAAGGGAAAATGACTGAGCCAAAACCAAATAC
GCCCTTGATCCCACCAACATCACCATCACGAAATCTCCCTGATTTCAAGA
AGTCAGTTAAGCTAAAATATGTGAAACTTGGATATCATTACCTAATCACT
CATGGAATGTTCCTCTTCCTTTCACCTCTTGTAGTCATAGTTGCCGCGCA
GCTTTCAACGTTTTCTTTTCAGGACCTTTATGATCTTTGGGAGCATCTCC
AGTACAATCTTATTTCTGTTATCATATGCTCAACTTTGCTTGTTTTCCTC
TTGACACTTTACTTTCTCACTCGCCCCCGGCCTGTTTACCTCGTAGACTT
TTCCTGCTACAAGCCTGAAGAATCTCGGAAATGTACTAAAAGGATTTTTA
TGGATCAGTCCCGGATGACTGGTACATTTACAGAGGAAAATCTTCAGTTT
CAGAAGAAGATCCTAGAGCGATCTGGACTTGGTGATTCAACTTACCTTCC
AGAGGCTGTGCTCAACATTCCTCCAAACCCATCAATGAAAGAAGCTAGAA
AAGAAGCTGAGGCTGTGATGTTTGGTGCCATTGATGAGCTTTTTGCAAAA
ACCTCTGTGAAACCCAAGGACATTGGTATCTTGATTGTGAATTGTAGCTT
GTTCAATCCAACGCCATCTCTGTCTGCCATGGTCATCAACCAT
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