CN188409

Overview
NameCN188409
Unique NameCN188409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188409_ssr168 microsatellite CN188409_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.674e-22
Identity = 48/66 (72.73%), Postives = 57/66 (86.36%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++FDWF  IL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRF 66          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.733e-21
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++ +WF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEELSIG ++F
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRF 66          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.956e-21
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++ +WFY +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT HPTSEELSIG  KF
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKF 66          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.861e-21
Identity = 47/66 (71.21%), Postives = 56/66 (84.85%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            MF+ +WF+ +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG +KF
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKF 66          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  605 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            MF+ +WF+ ILA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG++KF
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKF 66          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  605 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.586e-21
Identity = 48/64 (75.00%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  605 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKF 69          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 8.602e-21
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 2
Query:  605 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF
Sbjct:    5 VFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 68          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.503e-20
Identity = 47/67 (70.15%), Postives = 56/67 (83.58%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFLFDWF+ +L+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT HPTSEEL++G I+FK
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFK 67          
The following BLAST results are available for this feature:
BLAST of CN188409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
SAR1_CANAL2.674e-2272.73Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_PICPG1.733e-2171.21Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_YARLI2.956e-2169.70Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1_CRYNE3.861e-2171.21Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_YEAST6.586e-2173.44Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_USTMA6.586e-2172.73Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_KLULA6.586e-2175.00Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_ASHGO6.586e-2175.00Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_CANGA8.602e-2173.44Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1A_DICDI2.503e-2070.15GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188409 ID=CN188409; Name=CN188409; organism=Citrus sinensis; type=EST; length=800bp
CGCCATCGCATTAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAA
CAAAAATAAACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATT
GGCATCCAAGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACA
ATAACTATAGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCA
AGGGAAAAAAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGC
CAGCCGGAAAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTAC
TCTACCCAACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAAT
TTACCACCTGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGC
ATCACTCCCAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAA
CCCTAAGATTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
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