CN188409

Overview
NameCN188409
Unique NameCN188409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188409_ssr168 microsatellite CN188409_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 45/66 (68.18%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M+L +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.242e-19
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M+L +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.051e-18
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 2 
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT HPTSEEL IG  +F
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRF 66
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.219e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
[Close]
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.816e-18
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 2 
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71
The following BLAST results are available for this feature:
BLAST of CN188409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
SAR1_ASPOR1.242e-1968.18Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_ASPNG1.242e-1969.70Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_ASPNC1.242e-1969.70Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_EMENI1.051e-1868.18Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1B_MOUSE5.219e-1863.77GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1B_RAT6.816e-1863.77GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]
SAR1B_PIG6.816e-1863.77GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_HUMAN6.816e-1863.77GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_CRIGR6.816e-1863.77GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1B_BOVIN6.816e-1863.77GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188409 ID=CN188409; Name=CN188409; organism=Citrus sinensis; type=EST; length=800bp
CGCCATCGCATTAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAA
CAAAAATAAACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATT
GGCATCCAAGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACA
ATAACTATAGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCA
AGGGAAAAAAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGC
CAGCCGGAAAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTAC
TCTACCCAACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAAT
TTACCACCTGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGC
ATCACTCCCAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAA
CCCTAAGATTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
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