CN188409

Overview
NameCN188409
Unique NameCN188409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length800
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188409_ssr168 microsatellite CN188409_ssr168:168..179. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:1..800. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.518e-17
Identity = 43/69 (62.32%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.418e-17
Identity = 42/59 (71.19%), Postives = 50/59 (84.75%), Query Frame = 2
Query:  620 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            + +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELSIG +KF
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKF 62          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.285e-16
Identity = 42/69 (60.87%), Postives = 52/69 (75.36%), Query Frame = 2
Query:  602 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKF 796
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT HPTSEEL+I  + F
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTF 71          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.963e-13
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 2
Query:  599 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            MFL DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FK
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFK 67          
BLAST of CN188409 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.870e-13
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  611 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFK 799
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFK 67          
The following BLAST results are available for this feature:
BLAST of CN188409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
SAR1A_PONAB1.518e-1762.32GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_PIG1.518e-1762.32GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_HUMAN1.518e-1762.32GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_BOVIN1.518e-1762.32GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1_PHANO4.418e-1771.19Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1A_MOUSE1.285e-1660.87GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1B_DICDI2.963e-1352.24GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_GIALA3.870e-1357.14GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188409 ID=CN188409; Name=CN188409; organism=Citrus sinensis; type=EST; length=800bp
CGCCATCGCATTAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAA
CAAAAATAAACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATT
GGCATCCAAGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACA
ATAACTATAGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCA
AGGGAAAAAAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGC
CAGCCGGAAAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTAC
TCTACCCAACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAAT
TTACCACCTGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGC
ATCACTCCCAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAA
CCCTAAGATTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCG
TTGATTCCTCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTC
GATCTTTTTGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCAT
GTTTTTGTTTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGC
AAAAAGAGGCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACG
ACGCTGCTTCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAAC
ACAACATCCCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGG
back to top