CN188406

Overview
NameCN188406
Unique NameCN188406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length715
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188406_ssr18 microsatellite CN188406_ssr18:18..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13557 contig Csv1_Contig13557:19..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_MYCGA (Enolase OS=Mycoplasma gallisepticum GN=eno PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 113/217 (52.07%), Postives = 146/217 (67.28%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSG---NKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            + I +V A Q FDSRG PTV  +V  +DG    + V SGASTG  EALELRDGG+ Y GKGV+KAV+N+N  IGP + G D T QT ID +M+ +LDGT       K KLGANAILAVS+AVC+A A    +PLY++IA+        + +LPVP  NVINGG+HA N +  QEFMI+PVGA +  +A++M  EV+H L+ ++K K  +  TN GDE
Sbjct:   13 LEIKSVFAYQAFDSRGFPTVACEVVLNDGSKGLSMVSSGASTGEKEALELRDGGTKYHGKGVTKAVNNINKKIGPKILGVDATLQTQIDEFMI-ELDGTKT-----KAKLGANAILAVSMAVCRAAAKSLNLPLYQYIAKKVAKVKGADFILPVPMLNVINGGAHADNTIDFQEFMIMPVGAKTMAKALQMASEVFHSLQKLLKAK--KFNTNKGDE 221          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_METAC (Enolase OS=Methanosarcina acetivorans GN=eno PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 115/213 (53.99%), Postives = 140/213 (65.73%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            I  + AR+I DSRGNPT+EVDV T  G   RA+VPSGASTG  EALELRD   + Y GKGV  AV NVN II   L G D   Q  ID  M++ LD T N     K  LGAN+IL VS+AV KA A    +PLY++     G+    LPVP  NV+NGG HAGN+LA+QEFMI P GA +F EA+++G E+YH L   ++KKYG+ +TNVG E
Sbjct:   16 IQKIHAREILDSRGNPTIEVDVFTPKGF-GRASVPSGASTGTNEALELRDADPNRYGGKGVLTAVKNVNTIIQKELLGLDVRNQREIDELMIE-LDETEN-----KSNLGANSILGVSMAVAKAAADSLNMPLYRYFG---GSNAFTLPVPTMNVLNGGKHAGNELAIQEFMIQPKGAETFYEALQIGAEIYHVLGKYLEKKYGRSSTNVGYE 218          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_DESVM (Enolase OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=eno PE=1 SV=2)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 112/214 (52.34%), Postives = 143/214 (66.82%), Query Frame = 3
Query:   75 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            TI +V AR+I DSRGNPTVEV+V+   GH  RAAVPSGASTG  EALE+RDG    Y GKGV KAV NV   I  A+ G D   Q  +DN ++  LDGT N     K +LGANA+L VSLA  +A +    +PLY++   L G    VLPVP  N+INGG+HA N L +QEFMI+P+GA++F++A++MG E +H LKA++        T+VGDE
Sbjct:    3 TIVSVWAREILDSRGNPTVEVEVSLESGHTGRAAVPSGASTGSREALEMRDGDKGRYKGKGVEKAVDNVMGEIAEAIVGLDSLRQVQVDNTLLD-LDGTDN-----KSRLGANAMLGVSLATARAASSFLGLPLYQY---LGGVNAKVLPVPLMNIINGGAHAPNNLDIQEFMIMPIGAATFRDALRMGAETFHTLKALLAA--DGHVTSVGDE 205          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_CURLU (Enolase OS=Curvularia lunata PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 120/220 (54.55%), Postives = 151/220 (68.64%), Query Frame = 3
Query:   72 ITITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGK--DPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKN-LVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKM--GVEVYHHLKAVIKKKYGQDATNVGDE 713
            + IT + AR ++DSRGNPTVEVD+ T  G + RA VPSGASTG +EA ELRDG  + + GKGV+KAV+NVN II PAL  +  D  +Q+A+D ++  +LDGT N     K KLGANAIL VS+A+ KA A  K +PLY HI++L+G K   V    + NV+NGGSHAG  L  QEFMI P  A +F EA+++  G EVY  LKA+ KK YGQ A N GDE
Sbjct:    1 MAITKIHARSVYDSRGNPTVEVDIVTETG-LHRAIVPSGASTGSHEACELRDGDKTKWGGKGVTKAVANVNDIIAPALIKEKLDVKDQSAVDAFL-NKLDGTEN-----KTKLGANAILGVSMAIAKAAAAEKGVPLYAHISDLAGTKKPYVFRFLSKNVLNGGSHAGGFLLFQEFMIAP--AKTFAEALRIRQGAEVYQKLKALTKKTYGQSAGNYGDE 211          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_CORU7 (Enolase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=eno PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 112/212 (52.83%), Postives = 146/212 (68.87%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            I  V A +I DSRGNPTVEV+V   DG + RAAVPSGASTG++EA ELRDGG  YLGKGV+KAV  VN  I  ALAG +  +Q  ID  ++ +LDGT N     K +LGANA+L VS+AV  A A    + L++++   +G+   VLPVP  N++NGG+HA + + +QEFMI P+GA +F EA+++G EVYH LK VIK K    +T +GDE
Sbjct:    4 ILNVSALEIMDSRGNPTVEVEVILDDGSMGRAAVPSGASTGVHEAHELRDGGDRYLGKGVAKAVDFVNTEIDDALAGLEADDQRLIDQTLL-ELDGTEN-----KSRLGANALLGVSMAVAHAAADSAGLELFRYVGGPNGH---VLPVPMMNILNGGAHADSGVDVQEFMIAPIGAETFAEALQVGAEVYHSLKDVIKAK--GLSTGLGDE 204          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_CORJK (Enolase OS=Corynebacterium jeikeium (strain K411) GN=eno PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 113/212 (53.30%), Postives = 140/212 (66.04%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            I  + AR+I DSRGNPTVEVDV   DG   RAAVPSGASTG++EA ELRDGG  Y GKGV  AV NV   I   L G +  +Q  ID  M + LDGT N     K KLGANAIL VS+AV +A A    +PL++++    G    VLPVP  N++NGG+HA + + +QEFMI P+GA +F EA+++G EVYH LK VIK K    +T +GDE
Sbjct:    4 ILNIDAREIIDSRGNPTVEVDVLLDDGSFGRAAVPSGASTGVHEAHELRDGGERYQGKGVLNAVKNVIEDIDEELMGVEADDQRLIDQLM-RDLDGTEN-----KSKLGANAILGVSMAVARAAAESADLPLFRYV---GGPNAHVLPVPMMNILNGGAHADSGVDVQEFMIAPIGAETFSEALRVGAEVYHTLKKVIKDK--GLSTGLGDE 204          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_AZOC5 (Enolase OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=eno PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.480e-50
Identity = 114/213 (53.52%), Postives = 139/213 (65.26%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            I  +  R+I DSRGNPTVEVDV   DG + RAAVPSGASTG +EA+ELRDG +  YLGKGV KAV  VN  I  A+ G D  EQ  ID  M+ +LDGT N     K +LGANAIL VSLAV KA A    +PLY+++  ++      LPVP  N+INGG+HA N +  QEFMILP GA +F E ++ G E++H LK  +K       TNVGDE
Sbjct:    4 IVDIVGREILDSRGNPTVEVDVLLEDGALGRAAVPSGASTGAHEAVELRDGDTGRYLGKGVEKAVEAVNGEIFDAIGGLDAEEQAQIDAVMI-ELDGTPN-----KARLGANAILGVSLAVAKAAAISNNLPLYRYVGGVNAR---TLPVPMMNIINGGAHADNPIDFQEFMILPAGAPTFAEGLRWGAEIFHTLKKGLKD--AGHNTNVGDE 205          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_WOLTR (Enolase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=eno PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.238e-50
Identity = 113/213 (53.05%), Postives = 144/213 (67.61%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            I  V AR+I DSRG PTVEV++   DG   RA+VPSGASTG  EALELRD     Y GKGV KAV  VN +I  A+ G D  +Q+ ID  +++ LDGT N     K KLGANA L VSLA  KA A+  K+PLY++   L G +  V+P P  N+INGG HA NKL  QEFMILP+GA +F EA++M  EV+H+L+++++K+    +TNVGDE
Sbjct:    6 INNVFAREILDSRGYPTVEVEIELCDGATGRASVPSGASTGKLEALELRDQDEKRYCGKGVLKAVKAVNGVIANAIIGMDAADQSTIDKALIE-LDGTRN-----KSKLGANATLGVSLASAKAAANSFKMPLYRY---LGGEQANVMPFPLINIINGGVHADNKLDFQEFMILPIGAEAFSEAIRMSAEVFHNLRSILRKR--GYSTNVGDE 207          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_SULSY (Enolase OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=eno PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.238e-50
Identity = 117/214 (54.67%), Postives = 142/214 (66.36%), Query Frame = 3
Query:   75 TITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGGSD-YLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            TI  +  R++ DSRGNPTVE       G VA A VPSGASTG  EALELRDG    +LGKGV KAV N+N  I   L G++  +Q  ID  M++  DGT N     K  LGANAILAVSLAV +A A  K++PLY++   L G    VLPVP  NVINGG+HA N+L  QEFMI+PV   SFKEA++ GVE +H LK+V+K+K    +TNVGDE
Sbjct:    3 TIIDIIGREVLDSRGNPTVEATAVLESGVVASAIVPSGASTGANEALELRDGDKKRFLGKGVLKAVENINTKIADLLIGEESEDQVRIDRLMIEA-DGTEN-----KSNLGANAILAVSLAVARATAIEKEMPLYRY---LGGVNAKVLPVPLMNVINGGAHADNELDFQEFMIVPVCGGSFKEALRAGVETFHVLKSVLKEK--GYSTNVGDE 205          
BLAST of CN188406 vs. ExPASy Swiss-Prot
Match: ENO_STRPZ (Enolase OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=eno PE=3 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 3.238e-50
Identity = 115/213 (53.99%), Postives = 141/213 (66.20%), Query Frame = 3
Query:   78 ITAVKARQIFDSRGNPTVEVDVTTSDGHVARAAVPSGASTGIYEALELRDGG-SDYLGKGVSKAVSNVNAIIGPALAGKDPTEQTAIDNYMVQQLDGTVNEWGWCKQKLGANAILAVSLAVCKAGAHVKKIPLYKHIAELSGNKNLVLPVPAFNVINGGSHAGNKLAMQEFMILPVGASSFKEAMKMGVEVYHHLKAVIKKKYGQDATNVGDE 713
            IT V AR++ DSRGNPT+EV+V T  G   R  VPSGASTG +EA+ELRDG  S YLG G  KAV NVN II  A+ G D  +Q AID  M+  LDGT N     K KLGANAIL VS+AV +A A   ++PLY +   L G    VLP P  N+INGGSH+   +A QEFMI+PVGA +FKE ++ G EV+H LK ++K++     T VGDE
Sbjct:    4 ITDVYAREVLDSRGNPTLEVEVYTESGAFGRGMVPSGASTGEHEAVELRDGDKSRYLGLGTQKAVDNVNNIIAEAIIGYDVRDQQAIDRAMIA-LDGTPN-----KGKLGANAILGVSIAVARAAADYLEVPLYTY---LGGFNTKVLPTPMMNIINGGSHSDAPIAFQEFMIMPVGAPTFKEGLRWGAEVFHALKKILKER--GLVTAVGDE 205          
The following BLAST results are available for this feature:
BLAST of CN188406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENO_MYCGA2.480e-5052.07Enolase OS=Mycoplasma gallisepticum GN=eno PE=3 SV... [more]
ENO_METAC2.480e-5053.99Enolase OS=Methanosarcina acetivorans GN=eno PE=3 ... [more]
ENO_DESVM2.480e-5052.34Enolase OS=Desulfovibrio vulgaris (strain Miyazaki... [more]
ENO_CURLU2.480e-5054.55Enolase OS=Curvularia lunata PE=2 SV=1[more]
ENO_CORU72.480e-5052.83Enolase OS=Corynebacterium urealyticum (strain ATC... [more]
ENO_CORJK2.480e-5053.30Enolase OS=Corynebacterium jeikeium (strain K411) ... [more]
ENO_AZOC52.480e-5053.52Enolase OS=Azorhizobium caulinodans (strain ATCC 4... [more]
ENO_WOLTR3.238e-5053.05Enolase OS=Wolbachia sp. subsp. Brugia malayi (str... [more]
ENO_SULSY3.238e-5054.67Enolase OS=Sulfurihydrogenibium sp. (strain YO3AOP... [more]
ENO_STRPZ3.238e-5053.99Enolase OS=Streptococcus pyogenes serotype M49 (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188406 ID=CN188406; Name=CN188406; organism=Citrus sinensis; type=EST; length=715bp
AGTGTCGCACTCACAGACTCTCTCTCTCGTTCTAGATCTTTCTTCGCTTT
TCCAGCTTTCAGAAAATGGCAATAACCATCACTGCCGTCAAAGCCAGGCA
GATCTTTGACAGCCGTGGAAATCCAACGGTGGAGGTCGACGTGACAACAT
CAGATGGCCACGTGGCTAGAGCTGCTGTTCCAAGCGGTGCATCCACCGGA
ATTTATGAGGCGCTTGAACTAAGAGACGGAGGCTCTGATTACCTAGGCAA
GGGTGTATCGAAGGCTGTTAGCAATGTCAACGCCATCATTGGCCCTGCAC
TCGCTGGCAAGGACCCAACTGAGCAGACTGCTATTGACAACTATATGGTA
CAACAACTTGATGGAACTGTAAATGAGTGGGGTTGGTGCAAACAGAAGCT
TGGAGCAAACGCCATTTTGGCTGTCTCCCTAGCTGTCTGCAAGGCTGGTG
CACATGTCAAGAAGATTCCTCTTTACAAGCATATTGCCGAACTCTCTGGT
AACAAGAATTTGGTGTTGCCAGTGCCAGCATTCAATGTCATTAATGGTGG
ATCACATGCTGGAAACAAACTTGCTATGCAGGAGTTTATGATTCTTCCTG
TAGGAGCTTCCTCTTTCAAAGAAGCCATGAAGATGGGTGTAGAAGTATAT
CACCATCTGAAGGCTGTGATTAAAAAGAAATACGGCCAGGATGCTACAAA
TGTTGGTGATGAAGG
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