CN188398

Overview
NameCN188398
Unique NameCN188398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188398 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.011e-12
Identity = 32/66 (48.48%), Postives = 41/66 (62.12%), Query Frame = -2 
Query:  108 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 305
            MSD CG+CDCAD+SQCVKKG+SY    V+ + S     +  +V   E +G CKC   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFE--MAEEVGYEENDGKCKCTTGCSCAGCNCG 64
The following BLAST results are available for this feature:
BLAST of CN188398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MT3B_ORYSI1.011e-1248.48Metallothionein-like protein 3B OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188398 ID=CN188398; Name=CN188398; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTATCACCCTTACATTATTCTTAACCCCCACAATC
TTTAGGCACACTTGCAGCTTCTTATTTTTTGCTGCATGTGTTTGCTTATT
AGTGACTACCACAAGTGCAGTTCACACAAGCGCAGGTGGGGCCGCACTTG
CAGTTACCTTCAGCCTCAGCAGCCTGAACGTCCATGACAACAACGGTGCT
GACAAAGCTCAAGTCAGTCTCGACGAAGTCAGCAGCATAGCTGCTTCCCT
TCTTCACACACTGGCTCCTGTCAGCGCAGTCGCAGTTGCCGCAGGTGTCC
GACATGTTGATTGAGCTTAGAACTTAGAACTTAAAACTGGAAATAGAGGG
CTCTTTATTGTACGAAACGATGGGTCAAAATTGGTCGTAAACAAGATAAA
GATTGGCTGGCATTTTTCGAGGTGAACGACGGTTCATGCTTTGATAATTT
ACAAGTACTTGTGGAAAGAAAGTAGCGGATTCGAGACAGCTCGTGCAAAC
TGGCACTTGTGTTTATGTTGAGGGCGTACTCGCAATCCCTCCTGTGGGGG
CGGGAATTAAGCAGAAGATTGAGCTTCGGGTTAAGAAGGTCATCGATGTG
GGTTTGGTTGCGGCGGAGTATCCCCTGTCAAGAAAAAGCACAATCTTGAG
TATTTGAGGGATAACATTTATTTACGACCAAGGACAAACACGTAGCTGCA
GTTGCATGAATCCGGAAAGCTCTTGCTCATTCCACTCAATTAATTCTTTC
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