CN188387

Overview
NameCN188387
Unique NameCN188387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:346..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_LUMRU (40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.621e-24
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Sbjct:   85 VPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLALYKQKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   87 VPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   87 VPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   87 VPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.423e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   87 VPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.471e-24
Identity = 50/59 (84.75%), Postives = 56/59 (94.92%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
The following BLAST results are available for this feature:
BLAST of CN188387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RS23_ICTPU1.537e-2488.1440S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_HUMAN1.537e-2488.1440S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA1.537e-2488.1440S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN1.537e-2488.1440S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_LUMRU2.621e-2486.4440S ribosomal protein S23 OS=Lumbricus rubellus GN... [more]
RS23_YEAST3.423e-2488.1440S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA3.423e-2488.1440S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA3.423e-2488.1440S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA3.423e-2488.1440S ribosomal protein S23 OS=Candida glabrata GN=R... [more]
RS23_BRUMA4.471e-2484.7540S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188387 ID=CN188387; Name=CN188387; organism=Citrus sinensis; type=EST; length=344bp
TTTTGAGACACATATTAATTTACTAATAGTCTCAACAGAGGGAAAAAAAC
CAAAAAGTTCTCTCAACAGCAGTACATGATAAAGGAAAACAGTAATCAAC
GGGGATTAATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATC
TTGAATCAGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGG
GCCAGAAGAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGG
AATATCTCCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCT
CGTCATTTTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACG
back to top