CN188387
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13 Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KVV V+GVSL AL+K KK+KP Sbjct: 88 VPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13 Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG +N+I+E+DEV+IAG G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 88 VPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13 Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG LNYI E+DEV+I G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP Sbjct: 88 VPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13 Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG LNYI E+DEV+I G +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP Sbjct: 88 VPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13 Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG LNYI E+DEV+I G +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP Sbjct: 88 VPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13 Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG +NYI+E+DEV+I G G +G ++GDIPGVR+KV+ V+GVSL AL+ KK+KP Sbjct: 88 VPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2 Query: 170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340 P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 89 PGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2 Query: 170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340 P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 89 PGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12 Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = -2 Query: 173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343 VP DG +N+I+E+DEV+I G G G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP Sbjct: 88 VPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12 Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2 Query: 170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340 P DG +N+I+E+DEV+I G G KG ++GDIPG+R+KVVKV+ VSL L K +KEKPR Sbjct: 89 PGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146 The following BLAST results are available for this feature:
BLAST of CN188387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 51
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188387 ID=CN188387; Name=CN188387; organism=Citrus sinensis; type=EST; length=344bpback to top |