CN188387

Overview
NameCN188387
Unique NameCN188387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:346..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.551e-13
Identity = 36/58 (62.07%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG +N+I+E+DEV+IAG G   G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:   88 VPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 35/58 (60.34%), Postives = 48/58 (82.76%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG +N+I+E+DEV+IAG G   G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:   88 VPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.637e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   88 VPLDGSLNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 37/58 (63.79%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:   88 VPYDGGLNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.057e-13
Identity = 36/58 (62.07%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG LNYI E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   88 VPLDGSLNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_STAMF (30S ribosomal protein S12P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 35/58 (60.34%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG +NYI+E+DEV+I G G  +G ++GDIPGVR+KV+ V+GVSL AL+  KK+KP
Sbjct:   88 VPFDGGINYIDEHDEVIIEGIGGPRGRSMGDIPGVRYKVIMVNGVSLKALYLGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRHO (30S ribosomal protein S12P OS=Pyrococcus horikoshii GN=rps12p PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 7.910e-13
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340
            P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   89 PGDGAINFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_THECE (30S ribosomal protein S12P OS=Thermococcus celer GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340
            P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   89 PGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_SULSO (30S ribosomal protein S12P OS=Sulfolobus solfataricus GN=rps12p PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 34/58 (58.62%), Postives = 47/58 (81.03%), Query Frame = -2
Query:  173 VPNDGCLNYIEENDEVLIAGFGRK-GHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 343
            VP DG +N+I+E+DEV+I G G   G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:   88 VPGDGGVNFIDEHDEVIITGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS12_PYRKO (30S ribosomal protein S12P OS=Pyrococcus kodakaraensis GN=rps12p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = -2
Query:  170 PNDGCLNYIEENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 340
            P DG +N+I+E+DEV+I G G  KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:   89 PGDGAINHIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
The following BLAST results are available for this feature:
BLAST of CN188387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RS12_SULAC3.551e-1362.0730S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO4.637e-1360.3430S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_PYRIL4.637e-1362.0730S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_PYRCJ6.057e-1363.7930S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE6.057e-1362.0730S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]
RS12_STAMF7.910e-1360.3430S ribosomal protein S12P OS=Staphylothermus mari... [more]
RS12_PYRHO7.910e-1360.3430S ribosomal protein S12P OS=Pyrococcus horikoshi... [more]
RS12_THECE1.033e-1260.3430S ribosomal protein S12P OS=Thermococcus celer G... [more]
RS12_SULSO1.033e-1258.6230S ribosomal protein S12P OS=Sulfolobus solfatari... [more]
RS12_PYRKO1.033e-1260.3430S ribosomal protein S12P OS=Pyrococcus kodakarae... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188387 ID=CN188387; Name=CN188387; organism=Citrus sinensis; type=EST; length=344bp
TTTTGAGACACATATTAATTTACTAATAGTCTCAACAGAGGGAAAAAAAC
CAAAAAGTTCTCTCAACAGCAGTACATGATAAAGGAAAACAGTAATCAAC
GGGGATTAATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATC
TTGAATCAGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGG
GCCAGAAGAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGG
AATATCTCCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCT
CGTCATTTTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACG
back to top