CN188381

Overview
NameCN188381
Unique NameCN188381
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: GSP1_CANGA (GTP-binding nuclear protein GSP1/Ran OS=Candida glabrata GN=GSP1 PE=3 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 2.491e-90
Identity = 158/210 (75.24%), Postives = 175/210 (83.33%), Query Frame = 2
Query:   86 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDD 715
            + + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F TN G+I+F  WDTAGQEKFGGLRDGYYI+ QC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPEVQ+D               + PL D+DD
Sbjct:    2 SAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFHTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 211          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_BRUMA (GTP-binding nuclear protein Ran OS=Brugia malayi PE=2 SV=1)

HSP 1 Score: 328.561 bits (841), Expect = 2.109e-89
Identity = 158/209 (75.60%), Postives = 172/209 (82.30%), Query Frame = 2
Query:   92 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            D P+FKLV+VGDGGTGKTTFVKRHLTG+FEKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCA  MFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+LARKL GDPNL FV  PALAPPEVQ+D               +  L DDD+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDFEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAFNMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLARKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: GSP1_CANAL (GTP-binding nuclear protein GSP1/Ran OS=Candida albicans GN=GSP1 PE=3 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.754e-89
Identity = 155/208 (74.52%), Postives = 174/208 (83.65%), Query Frame = 2
Query:   92 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDD 715
            + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEV+PL F TN G+++F  WDTAGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPEVQ+D               + PL D+DD
Sbjct:    4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVNPLGFHTNFGELKFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPEVQVDADLMQKYQQEMEQATALPLPDEDD 211          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: SPI1_SCHPO (GTP-binding nuclear protein spi1 OS=Schizosaccharomyces pombe GN=spi1 PE=1 SV=1)

HSP 1 Score: 326.25 bits (835), Expect = 1.046e-88
Identity = 157/211 (74.41%), Postives = 172/211 (81.52%), Query Frame = 2
Query:   83 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDD 715
            Q  + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+I F  WDTAGQEK GGLRDGYYI GQC IIMFDVT+R+TYKNVP W RDL RVCENIPIVLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+PNL FV SPALAPPEVQ+D               + PL D+DD
Sbjct:    3 QPQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENIPIVLCGNKVDVKERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPNLEFVASPALAPPEVQVDQQLLAQYQQEMNEAAAMPLPDEDD 213          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_DROME (GTP-binding nuclear protein Ran OS=Drosophila melanogaster GN=ran PE=1 SV=1)

HSP 1 Score: 325.479 bits (833), Expect = 1.785e-88
Identity = 153/214 (71.50%), Postives = 174/214 (81.31%), Query Frame = 2
Query:   77 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            +Q+  D P+FK V+VGDGGTGKTTFVKRH+TGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGLRDGYYI GQCA+IMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PAL PPEV++D               +  L D+D++
Sbjct:    2 AQEGQDIPTFKCVLVGDGGTGKTTFVKRHMTGEFEKKYVATLGVEVHPLIFHTNRGAIRFNVWDTAGQEKFGGLRDGYYIQGQCAVIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGDPNLEFVAMPALLPPEVKMDKDWQAQIERDLQEAQATALPDEDEE 215          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_ONCVO (GTP-binding nuclear protein Ran OS=Onchocerca volvulus GN=ran-1 PE=2 SV=1)

HSP 1 Score: 324.709 bits (831), Expect = 3.045e-88
Identity = 157/209 (75.12%), Postives = 171/209 (81.82%), Query Frame = 2
Query:   92 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            D P+FKLV+VGDGGTGKTTFVKRHLTG+ EKKY  T+GVEVHPL F TN G+IRF  WDTAGQEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGN VDVK+R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKP L+L RKL GDPNL FV  PALAPPEVQ+D               +  L DDD+D
Sbjct:    6 DIPTFKLVLVGDGGTGKTTFVKRHLTGDPEKKYVATLGVEVHPLIFHTNRGQIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNFVDVKDRKVKAKTITFHRKKNLQYYDISAKSNYNFEKPSLWLVRKLLGDPNLEFVAMPALAPPEVQMDPTMVAQYEQEIAAAANAELPDDDED 214          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 322.783 bits (826), Expect = 1.157e-87
Identity = 153/205 (74.63%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  104 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I++  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FVE PALAPPE+ +D                  L D+DDD
Sbjct:   10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVEMPALAPPEIAMDPTLAAQYEHDLKVASETALPDEDDD 214          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_XENLA (GTP-binding nuclear protein Ran OS=Xenopus laevis GN=ran PE=1 SV=2)

HSP 1 Score: 322.013 bits (824), Expect = 1.974e-87
Identity = 154/205 (75.12%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  104 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  L D+DDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEQDLQNAQATALPDEDDD 215          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_RAT (GTP-binding nuclear protein Ran OS=Rattus norvegicus GN=Ran PE=1 SV=3)

HSP 1 Score: 322.013 bits (824), Expect = 1.974e-87
Identity = 154/205 (75.12%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  104 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  L D+DDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
BLAST of CN188381 vs. ExPASy Swiss-Prot
Match: RAN_PONAB (GTP-binding nuclear protein Ran OS=Pongo abelii GN=RAN PE=2 SV=3)

HSP 1 Score: 322.013 bits (824), Expect = 1.974e-87
Identity = 154/205 (75.12%), Postives = 168/205 (81.95%), Query Frame = 2
Query:  104 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLSDDDDD 718
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D               +  L D+DDD
Sbjct:   11 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 215          
The following BLAST results are available for this feature:
BLAST of CN188381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_CANGA2.491e-9075.24GTP-binding nuclear protein GSP1/Ran OS=Candida gl... [more]
RAN_BRUMA2.109e-8975.60GTP-binding nuclear protein Ran OS=Brugia malayi P... [more]
GSP1_CANAL2.754e-8974.52GTP-binding nuclear protein GSP1/Ran OS=Candida al... [more]
SPI1_SCHPO1.046e-8874.41GTP-binding nuclear protein spi1 OS=Schizosaccharo... [more]
RAN_DROME1.785e-8871.50GTP-binding nuclear protein Ran OS=Drosophila mela... [more]
RAN_ONCVO3.045e-8875.12GTP-binding nuclear protein Ran OS=Onchocerca volv... [more]
RAN_DANRE1.157e-8774.63GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAN_XENLA1.974e-8775.12GTP-binding nuclear protein Ran OS=Xenopus laevis ... [more]
RAN_RAT1.974e-8775.12GTP-binding nuclear protein Ran OS=Rattus norvegic... [more]
RAN_PONAB1.974e-8775.12GTP-binding nuclear protein Ran OS=Pongo abelii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188381 ID=CN188381; Name=CN188381; organism=Citrus sinensis; type=EST; length=718bp
TCTCTCGCTCACTTCTGTGTTCAGACCGCGAACTTCGTATTCTTTCGCAC
ACAGTACTCAACTCATGGCTCTGCCAAGTCAGCAAACTGTTGATTACCCG
AGCTTCAAACTCGTCATAGTCGGCGACGGTGGCACTGGGAAGACTACCTT
TGTGAAGAGGCATCTGACTGGGGAGTTTGAGAAGAAGTATGAACCAACTA
TTGGTGTGGAGGTTCATCCGTTGGATTTCTTTACAAATTGTGGCAAAATC
CGTTTCTACTGCTGGGACACTGCTGGCCAGGAAAAGTTTGGTGGTCTTAG
AGATGGTTATTACATCCATGGGCAATGTGCCATCATTATGTTTGATGTTA
CTGCCCGATTGACATACAAGAATGTTCCCACTTGGCACCGTGATCTTTGC
CGGGTGTGTGAAAATATACCGATTGTTCTCTGTGGGAACAAGGTTGATGT
GAAGAATAGGCAAGTCAAGGCAAAGCAGGTTACCTTCCACAGGAAGAAGA
ATCTACAGTACTATGAGATTTCTGCCAAGAGCAACTACAATTTTGAGAAA
CCTTTCTTGTACCTTGCCAGGAAGCTTGCTGGGGACCCAAATTTGCACTT
CGTGGAATCTCCTGCTCTCGCTCCTCCAGAAGTACAGATTGACTTAGCTG
CACAGCAACAACATGAAGCCGAGCTTGCCGCAGCAGCTAGCCAGCCTCTT
TCTGATGACGATGATGAT
back to top