CK939806

Overview
NameCK939806
Unique NameCK939806
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_GEOUR (Probable GTP-binding protein engB OS=Geobacter uraniireducens (strain Rf4) GN=engB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 45/83 (54.22%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  364 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAP 612
            +   EF+KS+ R    P+   PE A  GRSNVGKSSL+N LV RK L  TS TPG+TQ IN F +N  + LVDLPG G+A  P
Sbjct:    3 IKNVEFIKSATRPAHYPAGDFPEIAFAGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLINFFDVNGEFTLVDLPGYGFARVP 85          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_ALKMQ (Probable GTP-binding protein engB OS=Alkaliphilus metalliredigens (strain QYMF) GN=engB PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.492e-18
Identity = 43/81 (53.09%), Postives = 60/81 (74.07%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++  ++ V S+V  +  P +GLPE AL GRSNVGKSSL+N+++ RKKLA  S +PGKT+ +N + IN  ++LVDLPG GYA
Sbjct:    2 KIKTSDIVMSAVAPKQYPEEGLPEIALAGRSNVGKSSLINTILNRKKLARVSSSPGKTRTLNFYLINKEFHLVDLPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_LACSS (Probable GTP-binding protein engB OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=engB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAPRE 618
            +V + E V S+V     P+D LPE AL GRSNVGKSSL+N L+ RK  A TS  PGKTQ +N +R+ +  Y VD+PG GYA   ++
Sbjct:    2 EVHEVEMVMSAVAASQYPTDQLPEIALSGRSNVGKSSLINKLINRKSYARTSSKPGKTQTLNFYRVENELYFVDVPGYGYAKVSKK 87          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_CLOAB (Probable GTP-binding protein engB OS=Clostridium acetobutylicum GN=engB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  364 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAPRE 618
            + QAEF+ S+   +  P DG  E A VGRSNVGKSSL+N++  R+KL   S TPGKT+ +N F IN+ +Y VDLPG GYA   ++
Sbjct:    3 IKQAEFIISAAWKKQFPIDGKDEIAFVGRSNVGKSSLINAITNRRKLVKVSGTPGKTRLVNFFMINNDFYFVDLPGYGYAKVSKK 87          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACLD (Probable GTP-binding protein engB OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=engB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            +V ++E V S+V+ E  P  GLPE AL GRSNVGKSS +N+++ RK LA TS  PGKTQ +N + IND  + VD+PG G+A
Sbjct:    2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINTMINRKNLARTSSKPGKTQTLNFYIINDVLHFVDVPGYGFA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_ACHLI (Probable GTP-binding protein engB OS=Acholeplasma laidlawii (strain PG-8A) GN=engB PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.949e-18
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  364 VAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            + QAEF+ S+V   D P D    F ++GRSNVGKSSL+N++  RKKLA  S+TPGKT  +N + +N S YLVD PG GYA
Sbjct:    3 IKQAEFITSAVSITDLPKDDFDHFLILGRSNVGKSSLINAITNRKKLARVSQTPGKTITLNLYLLNQSLYLVDAPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_THETN (Probable GTP-binding protein engB OS=Thermoanaerobacter tengcongensis GN=engB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 42/87 (48.28%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYAAAPREL 621
            ++  AEFV S+      P D +P+ A+VG+SNVGKS+L+N+++ RK LA  S TPGKT+ IN + +N ++Y+VDLPG GYA   +E+
Sbjct:    2 KIKTAEFVGSAFNESQYPKDKIPQIAIVGKSNVGKSTLINTVLGRKNLAKVSSTPGKTRGINFYLVNRAFYIVDLPGYGYAKVSKEM 88          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_EXIS2 (Probable GTP-binding protein engB OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=engB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.546e-18
Identity = 46/81 (56.79%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            ++ +A+F+ S V  E  P   LPE AL GRSNVGKSS +N LV+RK LA TS  PGKTQ +N F IND    VD+PG GYA
Sbjct:    2 KIYKADFITSGVNPEHYPEPLLPEVALAGRSNVGKSSFINKLVQRKALARTSSKPGKTQTLNFFNINDEVMFVDVPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_BACCN (Probable GTP-binding protein engB OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=engB PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.325e-18
Identity = 45/81 (55.56%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            +V +AE V S+VR +  P   LPE AL GRSNVGKSS +N+++ RKKL   S  PGKTQ +N F IND  + VD+PG GYA
Sbjct:    2 KVTKAEIVISAVRPDQYPGGDLPEIALAGRSNVGKSSFINTILNRKKLVRISSKPGKTQTLNFFIINDMMHFVDVPGYGYA 82          
BLAST of CK939806 vs. ExPASy Swiss-Prot
Match: ENGB_PEDPA (Probable GTP-binding protein engB OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=engB PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.342e-18
Identity = 44/81 (54.32%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  361 QVAQAEFVKSSVRTEDCPSDGLPEFALVGRSNVGKSSLLNSLVRRKKLALTSKTPGKTQCINHFRINDSWYLVDLPGXGYA 603
            +V   E   S+VR +  P  G PE ALVGRSNVGKSSL N+L+ RK  A TS  PGKTQ +N +R+ D  + VD+PG GYA
Sbjct:    2 EVHNVELQISAVRPDQYPEQGYPEIALVGRSNVGKSSLTNTLINRKSYARTSSQPGKTQTLNFYRVEDQLFFVDVPGYGYA 82          
The following BLAST results are available for this feature:
BLAST of CK939806 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ENGB_GEOUR1.492e-1854.22Probable GTP-binding protein engB OS=Geobacter ura... [more]
ENGB_ALKMQ1.492e-1853.09Probable GTP-binding protein engB OS=Alkaliphilus ... [more]
ENGB_LACSS1.949e-1851.16Probable GTP-binding protein engB OS=Lactobacillus... [more]
ENGB_CLOAB1.949e-1851.76Probable GTP-binding protein engB OS=Clostridium a... [more]
ENGB_BACLD1.949e-1854.32Probable GTP-binding protein engB OS=Bacillus lich... [more]
ENGB_ACHLI1.949e-1855.00Probable GTP-binding protein engB OS=Acholeplasma ... [more]
ENGB_THETN2.546e-1848.28Probable GTP-binding protein engB OS=Thermoanaerob... [more]
ENGB_EXIS22.546e-1856.79Probable GTP-binding protein engB OS=Exiguobacteri... [more]
ENGB_BACCN3.325e-1855.56Probable GTP-binding protein engB OS=Bacillus cere... [more]
ENGB_PEDPA4.342e-1854.32Probable GTP-binding protein engB OS=Pediococcus p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004745_C12 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IF_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939806 ID=CK939806; Name=CK939806; organism=Citrus sinensis; type=EST; length=622bp
GGGGATGGCCACTCAAAATCTCTTGTAATCGAAAACCGCACACACAGAAA
AATGCTTTTTTCTCAGCTTCCAAGACTCAACTTTTCAATATTCGTAAAGC
CACCCCTGTCTCTCCGCTCACACTTCACCCTCTTACCAAAACACAGGCTC
AACTTCTCAGCGCTCAAATCCACACTCTCCACAACCGAACCGATACCCAT
ATCCCACGCGGTAGAACCAGAACCAGAACCCCACGTGGCAATATCACTCG
AAAAGCTACTTGTCCCGCCGGAAACAGAGGTCTCAATCGATGATTCGTCG
TTGAGTACGAGAATATTGAAGGGTTCGAACATAGTGTTGAGTAAGTACGC
AAGGGATGCTCAAGTTGCACAAGCTGAGTTCGTGAAGAGTAGTGTTAGGA
CTGAGGATTGCCCCTCTGATGGGTTGCCTGAATTTGCGCTGGTGGGCAGG
TCTAATGTTGGCAAATCTTCGCTTCTTAATTCACTTGTTAGAAGGAAGAA
GCTTGCTCTCACATCTAAGACGCCTGGGAAAACACAATGCATCAATCATT
TTCGGATAAATGATAGTTGGTACTTGGTGGATTTGCCTGGANNNGGGTAT
GCAGCTGCTCCTCGGGAACTTC
back to top