CN188379

Overview
NameCN188379
Unique NameCN188379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12188 contig Csv1_Contig12188:876..1633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188379 vs. ExPASy Swiss-Prot
Match: PDC_ASPOR (Pyruvate decarboxylase OS=Aspergillus oryzae GN=pdcA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 60/227 (26.43%), Postives = 103/227 (45.37%), Query Frame = 2
Query:   74 AVKPVLVAGP---KMRVAKACNAFVELADACRYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSGPEK 745
            A KPV++      + RV    + FVE +    +   V P  KG V E H ++ G Y G  S     E VES+D  L  G I +D+++ G+S  + +   +      V +     +  + MK  L+ + +R+ +      +     +P+ +  K   ++ +    L+  + + L  +  VI ETG + F     + P G     Q+ +GSIG+SVGA  G A +  E+
Sbjct:  220 AKKPVILVDACAIRHRVLDEVHEFVEKSGLPTF---VAPMGKGAVDETHKNYGGVYAGTGSNPGVREQVESSDLILSIGAIKSDFNTTGFSYRIGQLNTIDFHSTYVRVRYS-EYPDINMKGVLQKIVQRMGNLNVGPVSPPSNLLPDNE--KASTEQAITHAWLWPTVGQWLKEKDVVITETGTANFGIWDTRFPAGVTAISQVLWGSIGYSVGACQGAALAAKEQ 440          
BLAST of CN188379 vs. ExPASy Swiss-Prot
Match: PDC4_SCHPO (Putative pyruvate decarboxylase C3G9.11c OS=Schizosaccharomyces pombe GN=SPAC3G9.11c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 59/215 (27.44%), Postives = 87/215 (40.47%), Query Frame = 2
Query:  140 ELADACRYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVL-----FQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSV----GATLGYAQS-GPEKRVI 754
            +  DA  +   V P  K  + E  P+F G Y G+++     E  ES D  L  G + +D++S  ++      + +    D   I +G   G + MK  L  L+  +   +   +     +    +PPK    E      +     +      L     V  ETG S F       PKGC    Q+ +GSIGWSV    GATLG   S  P +R I
Sbjct:  237 DFIDATHFPTYVTPMGKTAINESSPYFDGVYIGSLTEPSIKERAESTDLLLIIGGLRSDFNSGTFTYATPASQTIEFHSDYTKIRSGVYEG-ISMKHLLPKLTAAIDKKSVQAKARPVHF----EPPKAVAAEGYAEGTITHKWFWPTFASFLRESDVVTTETGTSNFGILDCIFPKGCQNLSQVLWGSIGWSVGAMFGATLGIKDSDAPHRRSI 446          
BLAST of CN188379 vs. ExPASy Swiss-Prot
Match: PDC_ASPFU (Pyruvate decarboxylase OS=Aspergillus fumigatus GN=pdcA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.671e-11
Identity = 57/224 (25.45%), Postives = 98/224 (43.75%), Query Frame = 2
Query:   74 AVKPVLVAGPKMRVAKACNAFVELADACRYAVAVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPKEPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSGPEK 745
            A +PV++        K      +L +A      V P  KG V E H ++ G Y G  S     E VES+D  L  G I +D+++ G++  + +   +      V +     +  + MK  L+ + ++L         +    +P+ +P   +  +P+     +  I + L     VI ETG + F   + + P G     Q+ +GSIG+SVGA  G A +  E+
Sbjct:  220 AQRPVILVDACAIRHKVLQEVHDLMEASGLPTFVAPMGKGAVDETHKNYGGVYAGDGSNTGVREQVESSDLILSIGAIKSDFNTAGFTYRIGQLNTIDFHSTYVRVRYS-EYPDINMKGVLRKVIQKLGRVNAQPVPHLSNNLPDDEPKSGD--QPITHRWFWPKIGQWLKENDIVITETGTANFGIWETRFPAGVTAISQVLWGSIGYSVGACQGAALAAKEQ 440          
BLAST of CN188379 vs. ExPASy Swiss-Prot
Match: KDC_MYCUA (Alpha-keto-acid decarboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=kdc PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 51/197 (25.89%), Postives = 95/197 (48.22%), Query Frame = 2
Query:  170 AVMPSAKGLVPEHHPHFIGTYWGAVSTAFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAVILQPDRVVIANGPAFGCVLMKDFLKALSKRLKSNTTAYENYHRIYVPEGQPPKCEPK--EPLRVNVLFQHIQKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQSGPEKRVI 754
            A +   K L+ E   +F+G Y GA S     + +E A   + AG +F D  S  +S  +   + + +   +  +A+   F  + M   L+A++  L     +      + VP  +P    P+  EPL   +L+  + + L+    V+A+ G S++     +LP+G  +  Q  +GSIG+++ A LG A + P++R +
Sbjct:  249 ATLMWGKSLLDESSANFLGIYAGAASAEPVRKAIEQAPVLVTAGVVFTDMVSGFFSQRIDPARTIDIGQYQSSVAD-QVFAPLEMGAALQAVATILTKRGISSPP---VAVPPAEPGPPTPRRDEPLNQEMLWNRLCEALTPGNVVLADQGTSFYGMADHRLPQGVTFIGQPLWGSIGYTLPAALGAAVAHPDRRTV 441          
The following BLAST results are available for this feature:
BLAST of CN188379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
PDC_ASPOR4.342e-1126.43Pyruvate decarboxylase OS=Aspergillus oryzae GN=pd... [more]
PDC4_SCHPO4.342e-1127.44Putative pyruvate decarboxylase C3G9.11c OS=Schizo... [more]
PDC_ASPFU5.671e-1125.45Pyruvate decarboxylase OS=Aspergillus fumigatus GN... [more]
KDC_MYCUA7.406e-1125.89Alpha-keto-acid decarboxylase OS=Mycobacterium ulc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188379 ID=CN188379; Name=CN188379; organism=Citrus sinensis; type=EST; length=758bp
TTTCCTTTCCCCAGTTGAGAATGAGATGGGCTTGGAGGCTGCCCTTGAGG
CAGCAGCAGAGTTCTTGAACAAGGCGGTGAAACCCGTGTTGGTTGCTGGG
CCCAAAATGAGAGTGGCCAAGGCTTGCAACGCTTTCGTTGAACTTGCTGA
TGCTTGCCGCTACGCCGTTGCAGTGATGCCATCAGCGAAAGGGCTAGTAC
CAGAGCACCATCCCCATTTTATTGGAACTTATTGGGGTGCCGTGAGCACT
GCATTTTGTGCTGAAATTGTGGAATCTGCTGATGCTTATTTGTTTGCTGG
GCCTATATTTAATGACTATAGCTCGGTTGGGTACTCTCTTCTTCTCAAGA
AGGAGAAGGCAGTCATTCTGCAGCCTGATCGTGTGGTGATTGCTAATGGA
CCGGCATTTGGTTGTGTTTTGATGAAGGATTTCCTCAAAGCACTTTCAAA
GCGGCTCAAAAGCAACACTACTGCTTATGAGAATTACCACAGGATTTATG
TTCCTGAGGGGCAACCTCCGAAGTGTGAACCCAAAGAGCCCTTGAGAGTG
AATGTTCTGTTCCAACATATACAGAAGATGCTGTCTAGTGAAACTGCTGT
GATTGCTGAGACAGGGGACTCTTGGTTTAACTGCCAGAAACTGAAATTGC
CTAAGGGATGCGGGTATGAGTTCCAAATGCAATATGGATCAATTGGTTGG
TCTGTTGGTGCTACTCTTGGATATGCACAGTCTGGGCCAGAGAAGCGTGT
AATTGCTT
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