CN188378

Overview
NameCN188378
Unique NameCN188378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4376 contig Csv1_Contig4376:274..962. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_GIBZE (Translationally-controlled tumor protein homolog OS=Gibberella zeae GN=FG02523 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.146e-19
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQ--EIFKKNIEGATKF----LLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 687
            DEL+SDS+  KE + GI++E +   + +GAV+V+IGAN S               KV +IV++FRLQ    FDKK ++ Y+K ++K +  KL E     E  K    GA+KF    ++ K  D +F+ GESM  DG +V   Y+E    P  ++    LKE K
Sbjct:   11 DELISDSYDLKEVD-GIVYEADCAMIEEGAVEVNIGANASAEEAAEDLDDGAV--KVNNIVNSFRLQST-TFDKKSYLAYLKGYMKAIKAKLQENGSSAEDIKAFETGASKFVKDTIVPKFKDFEFYTGESMDPDGMVVLLNYREDGVTPYTIFWKHGLKETK 169          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_DANRE (Translationally-controlled tumor protein homolog OS=Danio rerio GN=tpt1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.896e-18
Identity = 56/164 (34.15%), Postives = 83/164 (50.61%), Query Frame = -3
Query:  214 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE---RQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 687
            DE+ SD +  KE+ENG++ EVEGK + +   D+D   IG N S                 VDIV   +LQE  ++DKK +  Y+K ++K +  KL E    R + F  N     K +L  + + QFF GESM+ DG +    ++E    P  ++  D L+  KC
Sbjct:   11 DEMFSDIYKIKESENGMMLEVEGKMITRAEGDIDDALIGGNASAEVADEGCDSTSVSG--VDIVLNHKLQET-SYDKKSYTAYIKDYMKAVKAKLQESAPNRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMIFFKDGLEIEKC 171          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_KLULA (Translationally-controlled tumor protein homolog OS=Kluyveromyces lactis GN=KLLA0C12716g PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.006e-18
Identity = 55/147 (37.41%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  256 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDP 687
            DELLSD++  K  + G+++E +   V  G  ++DIGANPS                V ++V +FRLQ Q AFDKK F+TY+K ++K +  +L E   +   +F+K  +   K ++    D +FF GESM  DG LV   Y+E  T P
Sbjct:   11 DELLSDAYDLKLVD-GVIYEADCDMVKVGGDNIDIGANPSAEDGGDDVEDGTEL--VNNVVHSFRLQ-QTAFDKKSFLTYIKGYMKEIKGRLQESNPDEVSVFEKGAQAYVKKVIGSFKDWEFFTGESMDPDGMLVLLNYREDGTTP 153          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_LABRO (Translationally-controlled tumor protein homolog OS=Labeo rohita GN=tpt1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.536e-17
Identity = 56/164 (34.15%), Postives = 84/164 (51.22%), Query Frame = -3
Query:  214 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVD---IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 687
            DE+ SD +  KE+ENG++ EVEGK + +   ++D   IG N S                 VDIV   +LQE  ++DKK +  Y+K ++K +  KL E   +R + F  N     K +L  + + QFF GESM+ DG +    ++E    P  L+  D L+  KC
Sbjct:   11 DEMFSDIYKIKESENGMMIEVEGKMISRAEGEIDDALIGGNASAEVQDEGCESTTVSG--VDIVLNHKLQET-SYDKKSYTAYIKDYMKAVKAKLQEVAPDRVDPFMANAPAEVKKILGNIKNFQFFTGESMNPDGMIGLLDFREDGVTPYMLFFKDGLEIEKC 171          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_AEDAE (Translationally-controlled tumor protein homolog OS=Aedes aegypti GN=Tctp PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.620e-17
Identity = 62/163 (38.04%), Postives = 83/163 (50.92%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQ---EIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYIADALKEVK 687
            DE+ SD++  K  +N +++EV GK V +   DV + GANPS                 VDIV   RL E    DKKQF TY+K ++K L  +L E      E+FK NI    K LL +  DLQFF GESM  +G +    Y+  +G + P  L     L+E K
Sbjct:   11 DEMFSDTYKLKLVDN-VMYEVYGKHVSRTLGDVQLDGANPSAEEADEGTDNATESG--VDIVLNHRLVETGFADKKQFTTYLKDYMKKLVTRLEENNPSEVEVFKTNINKVMKDLLGRFKDLQFFTGESMDCEGLIAMLEYRDIDGESTPVLLCFKHGLEEEK 170          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_NEUCR (Translationally-controlled tumor protein homolog OS=Neurospora crassa GN=NCU06464 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE------ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 687
            DE++SDS+  KE + GI +EV+   + +GAV VDIGAN S               KV ++V +FRLQ    FDKK ++ Y+K ++K +   L E      E ++   K    A   +L+K  D +F+ GESM+ DG +V   Y+E  T P  +     LKE K
Sbjct:   11 DEIISDSYDLKEVD-GIAYEVDCAMIEEGAVQVDIGANASAEEADEALDDGVV--KVNNVVHSFRLQSTQ-FDKKGYLVYLKGYMKSVKNALKEQGKSDEEIKDFETKASAFAKNVILAKFKDWEFYTGESMNPDGMVVLLNYREDGTTPYVVVWKHGLKETK 169          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_LATJA (Translationally-controlled tumor protein homolog OS=Lateolabrax japonicus GN=tpt1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.422e-17
Identity = 58/163 (35.58%), Postives = 83/163 (50.92%), Query Frame = -3
Query:  214 DELLSDSFPYKETENGILWEVEGKWVVQ--GAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 687
            DE+ SD+F  KE+ NGI +EV+GK   +     D  I AN S                 VDIV   +LQE  +FDKK +  Y+K ++K +  KL EE+ E    F  ++    K +L+ L + QFF GE+M+ +G +    Y+E  T P  L+  D L   KC
Sbjct:   11 DEMFSDAFKVKESANGIFYEVDGKITTRTDNIDDSLISANASAEETTDCTDSSVVSG--VDIVLNHKLQET-SFDKKSYKVYIKDYVKAIKQKLQEEKPERVDAFMADVAEEVKEILNNLKNYQFFTGENMNPEGMVGLLDYREDGTTPYMLFFKDGLLAEKC 170          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_AEDAL (Translationally-controlled tumor protein homolog OS=Aedes albopictus GN=Tctp PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.470e-17
Identity = 62/163 (38.04%), Postives = 83/163 (50.92%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQ---EIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYIADALKEVK 687
            DE+ SD++  K  +N +++EV GK V +   DV + GANPS                 VDIV   RL E    DKKQF TY+K ++K L  +L E      E+FK NI    K LL +  DLQFF GESM  +G +    Y+  +G + P  L     L+E K
Sbjct:   11 DEMFSDTYKVKLIDN-VMYEVYGKHVSRTLGDVQLDGANPSAEEADEGTDAATESG--VDIVLNHRLVETGFADKKQFTTYLKDYMKKLVTRLEENNPSEVEVFKTNINKVMKDLLGRFKDLQFFTGESMDCEGLIAMLEYRDIDGESTPILLCFKHGLEEEK 170          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_SCHPO (Translationally-controlled tumor protein homolog OS=Schizosaccharomyces pombe GN=p23fy PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.301e-16
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWV-VQGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 687
            DEL+SD++  KE ++ I++E + + V V+   DVDIGANPS                V ++V +FRL    +FDKK +++Y+K ++K +  +L E   ER  +F+KN  G  K +L+   D  F++GESM  D  +V   Y+E    P  ++  D L   K
Sbjct:   11 DELVSDAYDLKEVDD-IVYEADCQMVTVKQGGDVDIGANPSAEDAEENAEEGTET--VNNLVYSFRLSPT-SFDKKSYMSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILANFKDYDFYIGESMDPDAMVVLMNYREDGITPYMIFFKDGLVSEK 167          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_ANOGA (Translationally-controlled tumor protein homolog OS=Anopheles gambiae GN=Tctp PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.699e-16
Identity = 61/163 (37.42%), Postives = 84/163 (51.53%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQ---EIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYK--EGATDPTFLYIADALKEVK 687
            DE+ SD++  K  ++ +++EV GK V +   DV + GANPS                 VDIV   RL E    DKKQF TY+K ++K L  +L E+     E+FK NI    K LL +  DLQFF GESM  +G +    Y+  +G + P  L     L+E K
Sbjct:   11 DEMFSDTYKVKLVDD-VMYEVYGKHVSRTLGDVQLDGANPSAEEAEEGTESATESG--VDIVLNHRLVETGFSDKKQFTTYLKDYMKKLVTRLEEKSPGEVEVFKTNINKVMKDLLGRFKDLQFFTGESMDCEGLIAMLEYRDIDGESVPVLLCFKHGLEEEK 170          
The following BLAST results are available for this feature:
BLAST of CN188378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
TCTP_GIBZE8.146e-1937.42Translationally-controlled tumor protein homolog O... [more]
TCTP_DANRE6.896e-1834.15Translationally-controlled tumor protein homolog O... [more]
TCTP_KLULA9.006e-1837.41Translationally-controlled tumor protein homolog O... [more]
TCTP_LABRO1.536e-1734.15Translationally-controlled tumor protein homolog O... [more]
TCTP_AEDAE2.620e-1738.04Translationally-controlled tumor protein homolog O... [more]
TCTP_NEUCR3.422e-1736.20Translationally-controlled tumor protein homolog O... [more]
TCTP_LATJA3.422e-1735.58Translationally-controlled tumor protein homolog O... [more]
TCTP_AEDAL4.470e-1738.04Translationally-controlled tumor protein homolog O... [more]
TCTP_SCHPO1.301e-1634.78Translationally-controlled tumor protein homolog O... [more]
TCTP_ANOGA1.699e-1637.42Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188378 ID=CN188378; Name=CN188378; organism=Citrus sinensis; type=EST; length=689bp
AGTAAAAACTATTAAGTTATTTGGTAATTCAATCTCAAACCATAAAACCC
AATAATTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAA
AAACAGCAAGCACCTGTACAGAGTAAACCAGTACAAAAGATACATAAAAA
TAACCGCGGGCAATAATTAAAACTAGAACTACAGCAGGCACTTCCTCTTC
GAAGCCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAA
AATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCC
ATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCG
AGAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGC
CTCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTA
TGTTACAAACTGCTTCTTGTCAAAAGCAGGTTGCTCCTGCAGCCTGAATG
TGTCGACAATGTCGACCACCTTCACGGCTTGGTCATCAACACCCTCATCC
TCATCAGCTCCTTCGGCAGAAGGATTTGCACCAATGTCAACATCAACGGC
TCCTTGTACAACCCACTTTCCCTCAACTTCCCACAGAATCCCATTCTCAG
TTTCCTTGTAGGGAAAAGAGTCGGAGAGAAGCTCATCAC
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