CN188378

Overview
NameCN188378
Unique NameCN188378
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_XENLA (Translationally-controlled tumor protein homolog OS=Xenopus laevis GN=tpt1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.645e-12
Identity = 49/163 (30.06%), Postives = 73/163 (44.79%), Query Frame = -3
Query:  214 DELLSDSFPYKETENGILWEVEGKWVV--QGAVDVDIGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 687
            DE+ SD +   ET +G+  EVEGK +   +GA+D  +    +                 VDIV   +LQE   F K  +  Y+K ++K L   L +   ER   F K  +   K +L    + QF+ GE M+ DG +    Y+E    P  ++  D L   KC
Sbjct:   11 DEMFSDIYKIIETPDGMCLEVEGKVIQREEGAIDDALIGGNASAEFQEDDVGGSSLTSGVDIVMNHKLQET-GFTKDSYKNYIKDYVKQLKAHLEKTNPERVNTFMKGAQETVKKILGNFKNYQFYTGERMNPDGMVGLLDYREDGITPFMIFFKDGLIIEKC 172          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_WUCBA (Translationally-controlled tumor protein homolog OS=Wuchereria bancrofti PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.787e-11
Identity = 56/171 (32.75%), Postives = 82/171 (47.95%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWVVQGAVDVDI-GANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAF-DKKQFVTYMKRFIKLLTPKL-----SEERQEIFKKNIEGATKFLLSK--LSDLQFFVGESMHD---DGCLVFAYYK--EGATDPTFLYIADALKEVK 687
            DEL SDSFP K  + G++WE +G+ VV+   ++ + GANPS               + +D V   RLQE   + D   F +Y K F+K +   +     SE     FK+ I+     LLSK     LQFF+GE M +   +G +    Y+  E    P  + + +AL E K
Sbjct:   11 DELASDSFPMKLVD-GLIWEFKGRQVVRREGEIQLAGANPSTEGEDGDEGSEECVERGIDFVLNHRLQEMNCYEDLATFKSYCKSFMKKVVELMQKNGKSEAEISEFKRKIQAWVVSLLSKDRFKQLQFFIGERMAEGQGEGQVAVVEYRDEEEGEVPYLMLVKEALVEEK 180          
BLAST of CN188378 vs. ExPASy Swiss-Prot
Match: TCTP_SCHJA (Translationally-controlled tumor protein homolog OS=Schistosoma japonicum GN=TCTP PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 47/162 (29.01%), Postives = 79/162 (48.77%), Query Frame = -3
Query:  217 DELLSDSFPYKETENGILWEVEGKWV-VQGAVDVD-IGANPSXXXXXXXXXXXXXXVKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQE---IFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 687
            DE+ SDS    +  N +++EV+  ++ V   +D   I ANPS               +V+D+V   RL    +FDKK +  Y+K ++K +  +L +E  E   IF+  I      +     D + ++GESM+ DG +    ++E    P F+++ D L E K
Sbjct:   11 DEMFSDSHS-PQLINDVVYEVDANFITVSNGLDSKLIAANPSGEEGQEEVSDSTE--RVIDLVHASRLVST-SFDKKSYRAYLKGYLKAIKERLQKENPERVSIFESRINEYMVNVFKNFDDYEHYIGESMNPDGMVALMNFRENGVTPYFVFLKDGLIEEK 168          
The following BLAST results are available for this feature:
BLAST of CN188378 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
TCTP_XENLA9.645e-1230.06Translationally-controlled tumor protein homolog O... [more]
TCTP_WUCBA4.787e-1132.75Translationally-controlled tumor protein homolog O... [more]
TCTP_SCHJA6.252e-1129.01Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P02_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188378 ID=CN188378; Name=CN188378; organism=Citrus sinensis; type=EST; length=689bp
AGTAAAAACTATTAAGTTATTTGGTAATTCAATCTCAAACCATAAAACCC
AATAATTAGGAGCAGAAAAACATATTGTTTATGTCAAAATAAAAACTAAA
AAACAGCAAGCACCTGTACAGAGTAAACCAGTACAAAAGATACATAAAAA
TAACCGCGGGCAATAATTAAAACTAGAACTACAGCAGGCACTTCCTCTTC
GAAGCCCGGCTTAGCACTTCACCTCCTTCAATGCATCAGCAATATACAAA
AATGTTGGGTCGGTCGCACCTTCCTTGTAGTAAGCAAAGACAAGACAGCC
ATCATCATGCATGCTCTCCCCAACAAAGAATTGAAGGTCACTGAGCTTCG
AGAGCAAGAACTTGGTCGCTCCCTCAATATTCTTCTTAAATATCTCCTGC
CTCTCCTCACTCAGCTTGGGCGTCAGCAACTTGATGAATCTCTTCATGTA
TGTTACAAACTGCTTCTTGTCAAAAGCAGGTTGCTCCTGCAGCCTGAATG
TGTCGACAATGTCGACCACCTTCACGGCTTGGTCATCAACACCCTCATCC
TCATCAGCTCCTTCGGCAGAAGGATTTGCACCAATGTCAACATCAACGGC
TCCTTGTACAACCCACTTTCCCTCAACTTCCCACAGAATCCCATTCTCAG
TTTCCTTGTAGGGAAAAGAGTCGGAGAGAAGCTCATCAC
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