CN188375

Overview
NameCN188375
Unique NameCN188375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: C13A6_CAEEL (Putative cytochrome P450 CYP13A6 OS=Caenorhabditis elegans GN=cyp-13A6 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.275e-22
Identity = 60/230 (26.09%), Postives = 116/230 (50.43%), Query Frame = 3
Query:   84 IDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFS------------MNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYP-PVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            I+  ++A +    K+  K ++ GE    D + + ++    +++      N  F+             +++I +C +F  AG +TT++ L++   LL+ H + Q + ++EV +   + +  +D L+ LK ++ ++ E LRLYP   T  +R  ++ET +  +    G+ I +    +H +P +WG+D  +FKPER+  G  +  ++  SY PF  GPR C+G        K
Sbjct:  247 IEVAVQARIDQRAKDEIKGVEPGEP--QDFIDLFLDARVPDVKILSGEANEDFAKSSVVKINKELTFDEIIAQCFVFLAAGFDTTALSLSYATYLLATHPEIQTKLQEEVDRECPDPEIFFDHLSKLKYLECVMKETLRLYPLGTTANTRKCMRETTINGVNFDEGMNIQVDTWTLHHNPRIWGEDVEDFKPERWENGACEHLEHNGSYIPFGSGPRQCIGMRLAQMEQK 474          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3A2_RAT (Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 7.495e-22
Identity = 59/181 (32.60%), Postives = 94/181 (51.93%), Query Frame = 3
Query:  207 IEEHGNNKNV----GFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +  H N+K+       S  ++I +  +F FAG ETTS  L++ +  L+ H D Q++ ++E+     +  P  YD +  ++ + M+L E LRLYP    L R   K+ +L  L +P G  + +P   +H DP+ W     EF PERF++  +K + +   Y PF  GPR C+G  F     K
Sbjct:  276 LNAHNNSKDEVSHKALSDVEIIAQSVIFIFAGYETTSSTLSFVLYFLATHPDIQKKLQEEIDGALPSKAPPTYDIVMEMEYLDMVLNETLRLYPIGNRLERVCKKDIELDGLFIPKGSVVTIPTYALHHDPQHW-PKPEEFHPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRFALMNMK 454          

HSP 2 Score: 25.0238 bits (53), Expect = 7.495e-22
Identity = 10/18 (55.56%), Postives = 14/18 (77.78%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A T +LQN+S
Sbjct:  448 FALMNMKLALTKVLQNFS 465          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: C13A5_CAEEL (Putative cytochrome P450 CYP13A5 OS=Caenorhabditis elegans GN=cyp-13A5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 50/165 (30.30%), Postives = 99/165 (60.00%), Query Frame = 3
Query:  243 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTML-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            + +++I +  +F  AG +TT++ L+++  LL++H + Q++ ++EV +   N +  +D ++ LK ++ ++ E LR+YP  +++ +R  +KET +  + +  G  + +    +H DP++WG+DA EF+PER+  G  +    +  Y PF +GPRIC+G        K
Sbjct:  312 TFDEIIGQLFVFLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPNPEVTFDQISKLKYMECVVKEALRMYPLASIVHNRKCMKETNVLGVQIEKGTNVQVDTWTLHYDPKVWGEDANEFRPERWESG-DELFYAKGGYLPFGMGPRICIGMRLAMMEKK 475          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: C13A3_CAEEL (Putative cytochrome P450 CYP13A3 OS=Caenorhabditis elegans GN=cyp-13A3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.528e-22
Identity = 66/248 (26.61%), Postives = 126/248 (50.81%), Query Frame = 3
Query:   42 WRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMKAGEAANND-------LLGILMETSFREIEEHGN---------NKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTML-SRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            W F      + +  +   +  +L   ++ R    KAG  ++ +        L +  +T F E E             +K++ F  +++I +  +F  AG +TT++ L+++  LL++H + Q++ ++EV +   + +  +D L+ LK ++ ++ E LRLYP  +++ +R  +K T +  + +  G  +      +H DP+ WG++A EFKPER+  G  +A   + +Y PF LGPRIC+G        K
Sbjct:  231 WFFSKVPTAQTVTSLMHTLEIALTKRVEQRAADEKAGIESSGEPQDFIDLFLDVQADTDFLEDETKNGFARSQIVKVDKHLTF--DEIIGQLFVFLLAGYDTTALSLSYSSYLLARHPEIQKKLQEEVDRECPDPEVTFDQLSKLKYMECVIKETLRLYPLASIVHNRKCMKSTTVLGMKIEEGTNVQADTWTLHYDPKFWGENANEFKPERWESGDEQAVA-KGAYLPFGLGPRICIGMRLAYMEEK 475          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3A4_HUMAN (Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1 SV=4)

HSP 1 Score: 102.064 bits (253), Expect = 9.750e-22
Identity = 65/224 (29.02%), Postives = 117/224 (52.23%), Query Frame = 3
Query:   78 KEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMET-SFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD-YDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVS---YFPFALGPRICVGQNFCSSRSK 734
            +E+   +R S+    + +E  ++  +    D L +++++ + +E E H        S  +++ +  +F FAG ETTS +L++ M  L+ H D Q++ ++E+  V  N  P  YD +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H+DP+ W  +  +F PERF    SK  K+ +    Y PF  GPR C+G  F     K
Sbjct:  243 REVTNFLRKSVK---RMKESRLEDTQKHRVDFLQLMIDSQNSKETESHK-----ALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYW-TEPEKFLPERF----SKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMK 453          

HSP 2 Score: 22.7126 bits (47), Expect = 9.750e-22
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN+S
Sbjct:  447 FALMNMKLALIRVLQNFS 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4F3_MOUSE (Leukotriene-B(4) omega-hydroxylase 2 OS=Mus musculus GN=Cyp4f3 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 60/179 (33.52%), Postives = 97/179 (54.19%), Query Frame = 3
Query:  210 EEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +EHG       S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++  + +P   ++D L  L  + M + E LRL+PPVT +SR   ++  L     +P GV   + +   H +P +W D  V + P RF +  +   ++ +++ PF+ GPR C+GQ F  S  K
Sbjct:  307 DEHGK----ALSDEDIRAEADTFMFGGHDTTASGLSWILYNLARHPEYQERCRQEVRELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPVTAISRCCTQDIVLPDGRVIPKGVISRISIFGTHHNPAVWPDPEV-YDPFRF-DADNVKGRSPLAFIPFSAGPRNCIGQTFAMSEMK 479          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4F2_HUMAN (Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapiens GN=CYP4F2 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 58/172 (33.72%), Postives = 93/172 (54.07%), Query Frame = 3
Query:  243 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGD----DAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            S  D+  E   F F G +TT+  L+W +  L+KH ++QER RQEV ++  + +P   ++D L HL  + M + E LRL+PPV ++SR V ++  L     +P G+   + +   H +P +W D    D   F PE   E      ++ +++ PF+ GPR C+GQ F  +  K
Sbjct:  314 SDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAHLPFLTMCMKESLRLHPPVPVISRHVTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEVYDPFRFDPENIKE------RSPLAFIPFSAGPRNCIGQTFAMAEMK 479          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AR_ONCMY (Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp3a27 PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.244e-21
Identity = 61/207 (29.47%), Postives = 107/207 (51.69%), Query Frame = 3
Query:  102 ASLMGIIKNREKAMKAGEAANN-DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            ASL  I   R+     G + N  D L +++++      + G  +  G + ++++ +  +F FAG ET+S  +++    L+ +     + ++E+  VF N  P  Y+ L  +  +  +L E LRLYP    L R   K  ++  + +P    + +P   +H+DPE+W D   EFKPERF++  +K + +  +Y PF  GPR C+G  F
Sbjct:  252 ASLAKIKSGRD----TGNSTNRVDFLQLMIDSQKGSDTKTGEEQTKGLTDHEILSQAMIFIFAGYETSSSTMSFLAYNLATNHHVMTKLQEEIDTVFPNKAPIQYEALMQMDYLDCVLNESLRLYPIAPRLERVAKKTVEINGIVIPKDCIVLVPTWTLHRDPEIWSDPE-EFKPERFSKE-NKESIDPYTYMPFGAGPRNCIGMRF 452          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3A9_RAT (Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.268e-21
Identity = 59/203 (29.06%), Postives = 103/203 (50.74%), Query Frame = 3
Query:  129 REKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +E  MK  E    D L +++ +   ++++     +   S  +++ +  +F FAG ETTS  L++ + LL+ H D Q++ + E+     N     YD L  ++ + M++ E LRLYP    L R    + ++  + +P G  + +P   +H+DP  W  +  EF+PERF++  ++   N   Y PF  GPR C+G  F     K
Sbjct:  257 KENRMKEKEKQRMDFLQLMINSQNSKVKD----SHKALSDVEIVAQSVIFIFAGYETTSSALSFVLYLLAIHPDIQKKLQDEIDAALPNKAHATYDTLLQMEYLDMVVNETLRLYPIAGRLERVCKTDVEINGVFIPKGTVVMIPTFALHKDPHYW-PEPEEFRPERFSKK-NQDNINPYMYLPFGNGPRNCIGMRFALMNMK 453          

HSP 2 Score: 21.9422 bits (45), Expect = 1.268e-21
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN+S
Sbjct:  447 FALMNMKVALFRVLQNFS 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AE_CAVPO (Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.625e-21
Identity = 58/197 (29.44%), Postives = 108/197 (54.82%), Query Frame = 3
Query:  123 KNREKAMKAGEAANNDLLGILMET-SFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNK-PDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVG 707
            K +E  +++ +    D L +++ + +F++ E H    +V     +++ +  +F FAG ETTS  L++ M  L+ H D Q++ +QE+ +   N   P YD +  ++ + M++ E LRLYP    + R   K+ ++  ++ P G  + +P   +H+D + W  +  EF+PERF++  +K   +   Y PF  GPR C+G
Sbjct:  255 KTKENHLESNKKQRVDFLQMMLNSQNFKDTESHKALSDV-----EILAQSIIFIFAGYETTSSTLSFIMYSLATHPDVQKKLQQEIDKTLPNKAFPTYDVMMEMEYLDMVVNETLRLYPVTNRIERMSKKDFEINGMSFPKGTGVMIPSFALHRDSKYW-PEPDEFRPERFSKK-NKENIDPYIYMPFGNGPRNCIG 444          
The following BLAST results are available for this feature:
BLAST of CN188375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
C13A6_CAEEL3.275e-2226.09Putative cytochrome P450 CYP13A6 OS=Caenorhabditis... [more]
CP3A2_RAT7.495e-2232.60Cytochrome P450 3A2 OS=Rattus norvegicus GN=Cyp3a2... [more]
C13A5_CAEEL9.528e-2230.30Putative cytochrome P450 CYP13A5 OS=Caenorhabditis... [more]
C13A3_CAEEL9.528e-2226.61Putative cytochrome P450 CYP13A3 OS=Caenorhabditis... [more]
CP3A4_HUMAN9.750e-2229.02Cytochrome P450 3A4 OS=Homo sapiens GN=CYP3A4 PE=1... [more]
CP4F3_MOUSE1.244e-2133.52Leukotriene-B(4) omega-hydroxylase 2 OS=Mus muscul... [more]
CP4F2_HUMAN1.244e-2133.72Leukotriene-B(4) omega-hydroxylase 1 OS=Homo sapie... [more]
CP3AR_ONCMY1.244e-2129.47Cytochrome P450 3A27 OS=Oncorhynchus mykiss GN=cyp... [more]
CP3A9_RAT1.268e-2129.06Cytochrome P450 3A9 OS=Rattus norvegicus GN=Cyp3a9... [more]
CP3AE_CAVPO1.625e-2129.44Cytochrome P450 3A14 OS=Cavia porcellus GN=CYP3A14... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005O24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188375 ID=CN188375; Name=CN188375; organism=Citrus sinensis; type=EST; length=769bp
GAGGCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGATGGAGGTTT
TTACCTACAAAGAGAAATAGGAGAATGAAAGAAATTGACAAGGAAATCCG
GGCTTCATTGATGGGAATCATCAAAAATAGGGAGAAGGCAATGAAAGCAG
GGGAAGCTGCGAATAATGACTTGTTAGGCATACTGATGGAAACCAGTTTT
AGAGAGATTGAAGAACATGGAAATAACAAAAATGTTGGGTTCAGCATGAA
CGATGTGATCGAAGAGTGTAAGCTATTTTACTTTGCCGGCCAAGAGACTA
CCTCTGTTTTGCTTAATTGGACGATGGTCTTATTGAGCAAGCATCAAGAT
TGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATAATAA
GCCCGACTATGATGGATTGAATCACCTCAAAATTGTCCAGATGATACTTT
ATGAGGTACTCAGGCTTTATCCGCCCGTAACTATGCTTAGTCGAGCTGTT
CTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTCAAAT
TGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGTGACG
ATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAAGGCG
GCGAAAAATCAAGTTTCATATTTCCCATTCGCATTGGGTCCTAGGATATG
TGTTGGACAAAATTTTTGCTCTAGTAGAAGCAAAAATGGCCACGACAATG
ATTCTTCAAAACTACTCAT
back to top