CN188375

Overview
NameCN188375
Unique NameCN188375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AL_CALJA (Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3A21 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.040e-20
Identity = 53/162 (32.72%), Postives = 89/162 (54.94%), Query Frame = 3
Query:  252 DVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +++ +  +F FAG ETTS  L++ M  L+ H D Q++ ++E+  V  N  P  YD +  ++ + M++ E LRL+P    L R   K+ ++  + +P GV + +P   +H DP+ W  +  +F PERF++  +K   +   Y PF  GPR C+G  F     K
Sbjct:  294 ELVAQSIIFIFAGYETTSSTLSFIMYELATHPDVQQKLQEEIDAVLPNKAPATYDTVLQMEYLDMVVNETLRLFPLAMRLERVCKKDVEINGVFIPKGVVVMIPSYALHYDPKYW-TEPEKFLPERFSKN-NKDNIDPYIYTPFGTGPRNCIGMRFALMNMK 453          

HSP 2 Score: 22.7126 bits (47), Expect = 1.040e-20
Identity = 9/18 (50.00%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN+S
Sbjct:  447 FALMNMKLALIRVLQNFS 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: C4D20_DROME (Probable cytochrome P450 4d20 OS=Drosophila melanogaster GN=Cyp4d20 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.053e-20
Identity = 63/195 (32.31%), Postives = 99/195 (50.77%), Query Frame = 3
Query:  150 GEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDG------LNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            G  +   LL IL+++S           N   S  D+ EE   F F G +TTS  ++  +  +++H + Q+R  +E+ +V G   PD         L  LK +  ++ E +RLYPPV  + R   KE ++G+ T+PA   I L +   H+D   +  D + F+PERF E   +   N  +Y PF+ GP+ C+GQ F
Sbjct:  280 GSKSQMALLDILLQSSIN---------NQPLSDADIREEVDTFMFEGDDTTSSGVSHALYAIARHPEVQQRIFEELQRVLG---PDASAPVTQAQLQDLKYLDCVIKETMRLYPPVPAIGRHAQKELEIGDKTIPANTSIYLVLYYAHRDANYF-PDPLSFRPERFLED-QEQGHNTFAYVPFSAGPKNCIGQKF 460          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AP_MOUSE (Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.759e-20
Identity = 62/208 (29.81%), Postives = 100/208 (48.08%), Query Frame = 3
Query:  111 MGIIKNREKAMKAGEAANN-----DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            M   K   K MK    A+N     D L ++M T        G       S  ++  +  +F F G + TS  ++  M  L+ H D Q++ + E+ +   N  P  YD L  ++ + M++ E LRLYP    L R   K+ ++  + +P G  + +P+  +H++PE W  +  EF PERF++  +K   +   Y PF  GPR C+G  F
Sbjct:  246 MNFFKKFVKRMKKERLASNQKNRVDFLQLMMNTQ----NSKGQESQKALSDLEMAAQAVIFIFGGYDATSTSISLIMYELATHPDVQKKLQDEIDRTLPNKAPVTYDALMDMEYLDMVVNESLRLYPIAIRLERVSKKDVEINGVFIPKGTVVMIPIYPLHRNPEYW-PEPQEFCPERFSKE-NKGNIDPYIYMPFGNGPRNCIGMRF 447          

HSP 2 Score: 21.9422 bits (45), Expect = 1.759e-20
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN++
Sbjct:  447 FALISIKLAVIGVLQNFT 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP6W1_DROME (Probable cytochrome P450 6w1 OS=Drosophila melanogaster GN=Cyp6w1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 67/230 (29.13%), Postives = 118/230 (51.30%), Query Frame = 3
Query:   78 KEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGN-NKPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETK--------LGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSKNG 740
            +E  K IR+S+  ++K RE+    GE   NDL+ IL+    RE   +    +    ++ ++ +  +F  AG ET++  +  T+  L+K++  Q+R RQE++  FG+ +   Y+ +  +  +  ++ E LR YP V  + R   +  +          N+ LP G+ I +  + VH+DP+ W  D  ++ PERF    ++   N  +Y PF +GPR C+G      +SK G
Sbjct:  241 RETTKFIRSSVNYVLKERERT---GEK-RNDLIDILLALK-REAAANPGKMSKEVDLDYLVAQAAVFQTAGFETSASTMTMTLYELAKNEALQDRLRQEIVDFFGDEDHISYERIQEMPYLSQVVNETLRKYPIVGYIERECSQPAEGERFTLEPFHNMELPHGMSIYMSTVAVHRDPQYW-PDPEKYDPERF-NSSNRDNLNMDAYMPFGVGPRNCIGMRLGLLQSKLG 463          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4V3_MOUSE (Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 56/177 (31.64%), Postives = 98/177 (55.37%), Query Frame = 3
Query:  210 EEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFG-NNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +E GN      S  D+ EE   F F G +TT+  +NW++ LL  + + Q +  QE+ +VFG +++P   + L  LK +  ++ E LR++P V + +R++ ++ ++G   +  G +  +    +H+DP  +  D  EF+PERF    S+  ++  +Y PF+ GPR C+GQ F     K
Sbjct:  308 DEEGNR----LSQEDIREEVDTFMFEGHDTTAAAINWSLYLLGTNPEVQRKVDQELDEVFGRSHRPVTLEDLKKLKYLDCVIKETLRVFPSVPLFARSLSEDCEVGGYKVTKGTEAIIIPYALHRDPRYF-PDPEEFRPERFFPENSQ-GRHPYAYVPFSAGPRNCIGQKFAVMEEK 478          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4FC_HUMAN (Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.797e-20
Identity = 57/168 (33.93%), Postives = 92/168 (54.76%), Query Frame = 3
Query:  243 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++  +  P   ++D L  L  + M + E LRL+PP   +SR   ++  L     +P G+   + +I VH +P +W D  V + P RF    SK  ++ +++ PF+ GPR C+GQ F  +  K
Sbjct:  314 SDEDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDRDPKEIEWDDLAQLPFLTMCVKESLRLHPPAPFISRCCTQDIVLPDGRVIPKGITCLIDIIGVHHNPTVWPDPEV-YDPFRFDPENSK-GRSPLAFIPFSAGPRNCIGQAFAMAEMK 479          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AA_MESAU (Lithocholate 6-beta-hydroxylase OS=Mesocricetus auratus GN=CYP3A10 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.289e-20
Identity = 57/197 (28.93%), Postives = 96/197 (48.73%), Query Frame = 3
Query:  129 REKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            ++  + + +    D   ++M T        G       S  ++  +  +F FAG E+TS  +   +  L+ H D Q++   E+     N  P  YD L  ++ + M++ E LRLYP    L R   K  ++  L +P G+ + +P   +H+DPE W  +  EF+PERF++  +K + +   Y PF  GPR C+G  F
Sbjct:  257 KKNRLHSNQKTRMDFFQLMMNTQ----NSKGKESQKALSDLEMAAQAIIFIFAGYESTSTSICLVLYELATHPDVQKKLHDEIDSALPNKAPVTYDVLMGMEYLDMVINEGLRLYPIANRLERISKKAVEINGLFIPKGITVMVPTYPLHRDPEYW-PEPEEFRPERFSKE-NKGSIDPYVYMPFGNGPRNCIGMRF 447          

HSP 2 Score: 22.3274 bits (46), Expect = 2.289e-20
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN++
Sbjct:  447 FALLSMKLAVVSVLQNFT 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4F5_RAT (Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.347e-20
Identity = 58/179 (32.40%), Postives = 95/179 (53.07%), Query Frame = 3
Query:  210 EEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +EHG       S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++  + +P   ++D L  L  + M + E LRL+PP   L R   ++  L     +P G    + +  +H +P +W D  V F P RF +  ++  ++ +S+ PF+ GPR C+GQ F  +  K
Sbjct:  309 DEHGKE----LSDEDIRAEADTFMFGGHDTTASALSWILYNLARHPEYQERCRQEVWELLRDREPEEIEWDDLAQLPFLTMCIKESLRLHPPAIDLLRRCTQDIVLPDGRVIPKGNICVISIFGIHHNPSVWPDPEV-FDPFRF-DSENRQKRSPLSFIPFSAGPRNCIGQTFAMNEMK 481          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP3AI_RAT (Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a18 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.977e-20
Identity = 60/208 (28.85%), Postives = 101/208 (48.56%), Query Frame = 3
Query:  111 MGIIKNREKAMKAGEAANN-----DLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            M   K   K MK     +N     D L ++M T        G       S  ++  +  +F F G + TS  +++ M  L+   + Q++ + E+ +   N  P  YD L  ++ + M++ E LRLYP  T L R   K+ ++  + +P G  + +P+  +H++PE W +   EF PERF++  +K + +   Y PF  GPR C+G  F
Sbjct:  246 MNFFKKFVKTMKKNRLDSNQKNRVDFLQLMMNTQ----NSKGQESQKALSDLEMAAQAIIFIFGGYDATSTSISFIMYELATRPNVQKKLQNEIDRALPNKAPVTYDALMEMEYLDMVVNESLRLYPIATRLDRVSKKDVEINGVFIPKGTVVTIPIYPLHRNPEYWLEPE-EFNPERFSKE-NKGSIDPYVYLPFGNGPRNCIGMRF 447          

HSP 2 Score: 21.9422 bits (45), Expect = 2.977e-20
Identity = 8/18 (44.44%), Postives = 13/18 (72.22%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNYS 768
            FAL+  K+A   +LQN++
Sbjct:  447 FALISMKLAVIGVLQNFN 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4F8_HUMAN (Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.065e-20
Identity = 56/180 (31.11%), Postives = 97/180 (53.89%), Query Frame = 3
Query:  207 IEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            + E  N K +  S  D+  E   F F G +TT+  L+W +  L++H ++QER RQEV ++  + +P   ++D L  L  + M L E LRL+PP+   +R   ++  L  +  +P G    + +  +H +P +W D  V + P RF +  +   ++ +++ PF+ GPR C+GQ F  +  K
Sbjct:  304 LSEDKNGKEL--SDEDIRAEADTFMFGGHDTTASGLSWVLYNLARHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCLKESLRLHPPIPTFARGCTQDVVLPDSRVIPKGNVCNINIFAIHHNPSVWPDPEV-YDPFRF-DPENAQKRSPMAFIPFSAGPRNCIGQKFAMAEMK 479          
The following BLAST results are available for this feature:
BLAST of CN188375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
CP3AL_CALJA1.040e-2032.72Cytochrome P450 3A21 OS=Callithrix jacchus GN=CYP3... [more]
C4D20_DROME1.053e-2032.31Probable cytochrome P450 4d20 OS=Drosophila melano... [more]
CP3AP_MOUSE1.759e-2029.81Cytochrome P450 3A25 OS=Mus musculus GN=Cyp3a25 PE... [more]
CP6W1_DROME1.797e-2029.13Probable cytochrome P450 6w1 OS=Drosophila melanog... [more]
CP4V3_MOUSE1.797e-2031.64Cytochrome P450 4V3 OS=Mus musculus GN=Cyp4v3 PE=1... [more]
CP4FC_HUMAN1.797e-2033.93Cytochrome P450 4F12 OS=Homo sapiens GN=CYP4F12 PE... [more]
CP3AA_MESAU2.289e-2028.93Lithocholate 6-beta-hydroxylase OS=Mesocricetus au... [more]
CP4F5_RAT2.347e-2032.40Cytochrome P450 4F5 OS=Rattus norvegicus GN=Cyp4f5... [more]
CP3AI_RAT2.977e-2028.85Cytochrome P450 3A18 OS=Rattus norvegicus GN=Cyp3a... [more]
CP4F8_HUMAN3.065e-2031.11Cytochrome P450 4F8 OS=Homo sapiens GN=CYP4F8 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188375 ID=CN188375; Name=CN188375; organism=Citrus sinensis; type=EST; length=769bp
GAGGCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGATGGAGGTTT
TTACCTACAAAGAGAAATAGGAGAATGAAAGAAATTGACAAGGAAATCCG
GGCTTCATTGATGGGAATCATCAAAAATAGGGAGAAGGCAATGAAAGCAG
GGGAAGCTGCGAATAATGACTTGTTAGGCATACTGATGGAAACCAGTTTT
AGAGAGATTGAAGAACATGGAAATAACAAAAATGTTGGGTTCAGCATGAA
CGATGTGATCGAAGAGTGTAAGCTATTTTACTTTGCCGGCCAAGAGACTA
CCTCTGTTTTGCTTAATTGGACGATGGTCTTATTGAGCAAGCATCAAGAT
TGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATAATAA
GCCCGACTATGATGGATTGAATCACCTCAAAATTGTCCAGATGATACTTT
ATGAGGTACTCAGGCTTTATCCGCCCGTAACTATGCTTAGTCGAGCTGTT
CTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTCAAAT
TGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGTGACG
ATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAAGGCG
GCGAAAAATCAAGTTTCATATTTCCCATTCGCATTGGGTCCTAGGATATG
TGTTGGACAAAATTTTTGCTCTAGTAGAAGCAAAAATGGCCACGACAATG
ATTCTTCAAAACTACTCAT
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