CN188375

Overview
NameCN188375
Unique NameCN188375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP131_DROME (Probable cytochrome P450 313a1 OS=Drosophila melanogaster GN=Cyp313a1 PE=3 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.987e-19
Identity = 55/166 (33.13%), Postives = 90/166 (54.22%), Query Frame = 3
Query:  252 DVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVF---GNNKPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGN-LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERF-AEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            DV  EC +   AG +T+++ +   + LL+ H + QE   +E+  VF   G+    Y  +  L  ++ ++ E LRL P + + +R    + +L N + +P GV IG+ M   H++PE+WG DA  F P+ F AE + +  K+  +Y PFA G R C+G  +    SK
Sbjct:  286 DVKSECCIMIAAGYDTSALTVYHALFLLANHPEHQEAVFEELNGVFPDAGHFGITYPDMQKLDYLERVIKETLRLIPAIPITARETKNDVRLSNGVLIPKGVVIGIDMFHTHRNPEVWGPDADNFNPDNFLAENMEQ--KHPYAYIPFARGKRNCIGSKYAMMSSK 449          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: C340_ORYLA (Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.437e-19
Identity = 55/175 (31.43%), Postives = 93/175 (53.14%), Query Frame = 3
Query:  207 IEEHGNNKN----VGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            I+   NN+N     G S ++++ +  +F FAG ETTS  L +    L+ + +  ++ ++E+   F N  P  Y  L  ++ +  ++ E LRLYP    L R      ++  L +P  + + +P   +H+DPELW  +  +FKPERF++  +K   +  +Y PF  GPR C+G  F
Sbjct:  276 IDSQKNNQNGLQDKGLSDHEILSQAMIFIFAGYETTSSSLTFLAYNLATNPEVMKKLQKEIDATFPNKAPVQYVPLMEMEYLDCVVNESLRLYPIAARLERVAKATVEVNGLVIPKDMVVMVPTWPLHRDPELW-PEPEKFKPERFSKE-NKDTFDPYTYMPFGAGPRNCIGMRF 448          

HSP 2 Score: 21.557 bits (44), Expect = 2.437e-19
Identity = 10/17 (58.82%), Postives = 11/17 (64.71%), Query Frame = 1
Query:  715 FALVEAKMATTMILQNY 765
            FALV  K+A   ILQ Y
Sbjct:  448 FALVMMKLAVVEILQTY 464          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP9E2_BLAGE (Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9E2 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 63/218 (28.90%), Postives = 106/218 (48.62%), Query Frame = 3
Query:  117 IIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVG-------FSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNN--KPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL---GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            ++ N     K       D++ +LM+     ++   N +  G       +  +D+  +  LF+FAG +T S LL +   LL+ + D Q R + E+ Q    N  K  Y+ ++ +K + M++ E LRLYPP     R  +K  +L    + TL  G  + +P+  +H DP+ +  +  +F PERF++  +K      +Y PF  GPR C+G  F    SK
Sbjct:  271 LVHNTMDTRKTKGIIRPDMIHLLMQAKEGTLKSEENGETNGKIASKPKWDDDDLTAQAVLFFFAGFDTASTLLCFMSHLLATNPDVQNRLQDEIDQSLEENDGKLTYEAIHSMKYLDMVVSESLRLYPPAIFTDRKCVKNYRLPMEPSYTLEPGDAVWIPIYAIHHDPKYY-PNPEKFDPERFSDE-NKDNIKPFTYLPFGSGPRNCIGNRFALMESK 486          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4S3_DROME (Probable cytochrome P450 4s3 OS=Drosophila melanogaster GN=Cyp4s3 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 53/158 (33.54%), Postives = 89/158 (56.33%), Query Frame = 3
Query:  243 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            S  D+ EE   F F G +TTS  + + + LLSK+ D Q+RA +E  ++ G  K        +  ++ ++ E LR+YP V   SR VL++ ++G LT+P G  I   + ++H+DP+ +  D   F P+RF   +++   +  ++  F+ GPR C+GQ F
Sbjct:  293 SDTDIREEVDTFMFEGHDTTSSAIAFALSLLSKNPDVQQRAFEEASELEGREKES------MPYLEAVIKETLRIYPSVPFFSRKVLEDLEVGKLTVPKGASISCLIYMLHRDPKNF-PDPERFDPDRFL--VNEKQMHPFAFAAFSAGPRNCIGQKF 441          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4F3_HUMAN (Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapiens GN=CYP4F3 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 56/168 (33.33%), Postives = 91/168 (54.17%), Query Frame = 3
Query:  243 SMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP---DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            S  D+  E   F F G +TT+  L+W +  L+KH ++QER RQEV ++  + +P   ++D L  L  + M + E LRL+PPV  +SR   ++  L     +P G+   + +   H +P +W D  V + P RF     K  ++ +++ PF+ GPR C+GQ F  +  K
Sbjct:  314 SDEDIRAEADTFMFEGHDTTASGLSWVLYHLAKHPEYQERCRQEVQELLKDREPKEIEWDDLAQLPFLTMCIKESLRLHPPVPAVSRCCTQDIVLPDGRVIPKGIICLISVFGTHHNPAVWPDPEV-YDPFRFDPKNIK-ERSPLAFIPFSAGPRNCIGQAFAMAEMK 479          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP46A_MOUSE (Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp46a1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.595e-19
Identity = 70/233 (30.04%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   45 RFLPTKRN--RRMKEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +F+P KR   R ++E  + +R      ++ R +A+K GE    D+L     T   + EE   +  V      +++    F+ AG ET++  L +T++ LS+  +   R + EV +V G+ +  DY+ L  L+ +  +L E LRLYPP     R + +ET +  + +P    + L    V    + + +D + F P+RF  G   A K + +YFPF+LG R C+GQ F     K
Sbjct:  231 KFMPGKRKQLREIRESIRLLRQVGKDWVQRRREALKRGEDMPADIL-----TQILKAEEGAQDDEV------LLDNFVTFFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVVGSKRHLDYEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPL-LFSTYVMGRMDTYFEDPLTFNPDRFGPG---APKPRFTYFPFSLGHRSCIGQQFAQMEVK 448          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP46A_HUMAN (Cholesterol 24-hydroxylase OS=Homo sapiens GN=CYP46A1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 71/233 (30.47%), Postives = 117/233 (50.21%), Query Frame = 3
Query:   45 RFLPTKRN--RRMKEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +FLP KR   R ++E  + +R      ++ R +A+K GE    D+L  +++       E G   + G   N V      F+ AG ET++  L +T++ LS+  +   R + EV +V G+ +  D++ L  L+ +  +L E LRLYPP     R + +ET +  + +P    + L    V    + + +D + F P+RF  G   A K + +YFPF+LG R C+GQ F     K
Sbjct:  231 KFLPGKRKQLREVRESIRFLRQVGRDWVQRRREALKRGEEVPADILTQILKA------EEGAQDDEGLLDNFVT-----FFIAGHETSANHLAFTVMELSRQPEIVARLQAEVDEVIGSKRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLIDGVRVPGNTPL-LFSTYVMGRMDTYFEDPLTFNPDRFGPG---APKPRFTYFPFSLGHRSCIGQQFAQMEVK 448          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CPXB_BACME (Bifunctional P-450/NADPH-P450 reductase OS=Bacillus megaterium GN=CYP102A1 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 4.426e-19
Identity = 69/219 (31.51%), Postives = 112/219 (51.14%), Query Frame = 3
Query:   66 NRRMKEIDKEIRASLMG-IIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPDYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKL-GNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNF 716
            N+R  + D ++   L+  II +R    KA    ++DLL  ++     E  E  +++N+ + +         F  AG ETTS LL++ +  L K+    ++A +E  +V  +  P Y  +  LK V M+L E LRL+P     S    ++T L G   L  G ++ + +  +H+D  +WGDD  EF+PERF    + +A  Q ++ PF  G R C+GQ F
Sbjct:  202 NKRQFQEDIKVMNDLVDKIIADR----KASGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIIT-------FLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVLVDPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFE---NPSAIPQHAFKPFGNGQRACIGQQF 406          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP4V2_HUMAN (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.426e-19
Identity = 68/256 (26.56%), Postives = 120/256 (46.88%), Query Frame = 3
Query:   15 VFRSVHIPG-----WRFLPTKRNRRMKEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREI---------EEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFG-NNKP-DYDGLNHLKIVQMILYEVLRLYPPVTMLSRAVLKETKLGNLTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSK 734
            +FR + +P      W +L  K     K+  K +      +I  R   M A E    D  G     + R           ++ GN      S  D+ EE   F F G +TT+  +NW++ LL  + + Q++   E+  VFG +++P   + L  L+ ++ ++ E LRL+P V + +R+V ++ ++    +  G +  +    +H+DP  +  +  EF+PERF    +   ++  +Y PF+ GPR C+GQ F     K
Sbjct:  230 IFRRIKMPWLWLDLW-YLMFKEGWEHKKSLKILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLLSVTDDEGNR----LSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYF-PNPEEFQPERFFPE-NAQGRHPYAYVPFSAGPRNCIGQKFAVMEEK 478          
BLAST of CN188375 vs. ExPASy Swiss-Prot
Match: CP6A1_MUSDO (Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.781e-19
Identity = 66/239 (27.62%), Postives = 118/239 (49.37%), Query Frame = 3
Query:   48 FLPTKRNRRMKEIDKEIRASLMGIIKNREKAMKAGEAANNDLLGILMETSFREIEEHGNNKNVGFSMNDVIEECKLFYFAGQETTSVLLNWTMVLLSKHQDWQERARQEVLQVFGNNKPD---YDGLNHLKIVQMILYEVLRLYP--PVTMLSRAVLKETKLGN---LTLPAGVQIGLPMILVHQDPELWGDDAVEFKPERFAEGISKAAKNQVSYFPFALGPRICVGQNFCSSRSKNG 740
            F    R   M+ + +++    M  IK      +      ND L ++++    +      +K  G + N++  +  +F+  G ET+S  + + +  L+++Q  Q+R R+EV +VF   K D   YD L ++  +  +L E LR YP    + L+R  L +  + +     LP G  + +P++ +H DPEL+  +  EF PERF+  + K  ++ V +  F  GPR C+G  F   +S+ G
Sbjct:  229 FPELSRKLGMRVLPEDVHQFFMSSIKETVDYREKNNIRRNDFLDLVLDL---KNNPESISKLGGLTFNELAAQVFVFFLGGFETSSSTMGFALYELAQNQQLQDRLREEVNEVFDQFKEDNISYDALMNIPYLDQVLNETLRKYPVGVGSALTRQTLNDYVVPHNPKYVLPKGTLVFIPVLGIHYDPELY-PNPEEFDPERFSPEMVK-QRDSVDWLGFGDGPRNCIGMRFGKMQSRLG 462          
The following BLAST results are available for this feature:
BLAST of CN188375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 384
Match NameE-valueIdentityDescription
CP131_DROME1.987e-1933.13Probable cytochrome P450 313a1 OS=Drosophila melan... [more]
C340_ORYLA2.437e-1931.43Cytochrome P450 3A40 OS=Oryzias latipes GN=cyp3a40... [more]
CP9E2_BLAGE2.595e-1928.90Cytochrome P450 9e2 OS=Blattella germanica GN=CYP9... [more]
CP4S3_DROME2.595e-1933.54Probable cytochrome P450 4s3 OS=Drosophila melanog... [more]
CP4F3_HUMAN2.595e-1933.33Leukotriene-B(4) omega-hydroxylase 2 OS=Homo sapie... [more]
CP46A_MOUSE2.595e-1930.04Cholesterol 24-hydroxylase OS=Mus musculus GN=Cyp4... [more]
CP46A_HUMAN3.389e-1930.47Cholesterol 24-hydroxylase OS=Homo sapiens GN=CYP4... [more]
CPXB_BACME4.426e-1931.51Bifunctional P-450/NADPH-P450 reductase OS=Bacillu... [more]
CP4V2_HUMAN4.426e-1926.56Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1... [more]
CP6A1_MUSDO5.781e-1927.62Cytochrome P450 6A1 OS=Musca domestica GN=CYP6A1 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188375 ID=CN188375; Name=CN188375; organism=Citrus sinensis; type=EST; length=769bp
GAGGCACAATGCAAGTCTTTCGTTCAGTTCACATTCCAGGATGGAGGTTT
TTACCTACAAAGAGAAATAGGAGAATGAAAGAAATTGACAAGGAAATCCG
GGCTTCATTGATGGGAATCATCAAAAATAGGGAGAAGGCAATGAAAGCAG
GGGAAGCTGCGAATAATGACTTGTTAGGCATACTGATGGAAACCAGTTTT
AGAGAGATTGAAGAACATGGAAATAACAAAAATGTTGGGTTCAGCATGAA
CGATGTGATCGAAGAGTGTAAGCTATTTTACTTTGCCGGCCAAGAGACTA
CCTCTGTTTTGCTTAATTGGACGATGGTCTTATTGAGCAAGCATCAAGAT
TGGCAAGAACGTGCAAGGCAAGAGGTTTTGCAAGTGTTTGGCAATAATAA
GCCCGACTATGATGGATTGAATCACCTCAAAATTGTCCAGATGATACTTT
ATGAGGTACTCAGGCTTTATCCGCCCGTAACTATGCTTAGTCGAGCTGTT
CTTAAGGAAACGAAACTCGGAAACTTGACATTACCCGCTGGGGTTCAAAT
TGGCTTGCCAATGATCCTAGTTCACCAGGATCCTGAACTTTGGGGTGACG
ATGCAGTTGAGTTTAAGCCGGAAAGGTTTGCGGAAGGAATTTCAAAGGCG
GCGAAAAATCAAGTTTCATATTTCCCATTCGCATTGGGTCCTAGGATATG
TGTTGGACAAAATTTTTGCTCTAGTAGAAGCAAAAATGGCCACGACAATG
ATTCTTCAAAACTACTCAT
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