CN188364

Overview
NameCN188364
Unique NameCN188364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NHP2_BRABE (H/ACA ribonucleoprotein complex subunit 2-like protein OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 36/106 (33.96%), Postives = 54/106 (50.94%), Query Frame = -2 
Query:  293 VNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQ 610
            VNP A PLA   LT  +   V++A+  K ++KG  +  K + +G    +++A DT           + ED  +PY +VP+KQ LG A G  RP     +  NE+ Q
Sbjct:   37 VNPIASPLAARKLTKRLYKTVKKASKEKNIRKGIRDVQKFIKKGERGIVLIAGDTTPIEVYCHLPVVCEDAKIPYCYVPAKQDLGEAAGSKRPTCCVLLKPNESYQ 142
The following BLAST results are available for this feature:
BLAST of CN188364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NHP2_BRABE6.144e-1133.96H/ACA ribonucleoprotein complex subunit 2-like pro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188364 ID=CN188364; Name=CN188364; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTAAACACAGTTATAACCATTGTTTGTAGCATCAT
TCATTCATTGCAGGTTCTGGTAAATATGATTCCAAAAGCTTTCCCATAAT
GCATGACAAGAAAACATAAAAGACAAAAATACAAAGATTAATAATAGAAG
ATTTCCAAGCAGCACAACTACACCATCAGTCAAAGCCTCTAACCACCATC
AAAGAGGCCCATCACACCGAATATGAATCCCATTATATTCATATCAAGAG
CTTCTCAATGGCATCCTTCAGCTGTTGAATTTGAGTCTTCAACTGACTCG
CCTCATTTGAGGTCACAGAGCAAGCAATGACAGGTCTTGTGACCCCACAT
GCCCTGCCAAGAGCCTGCTTTGAAGGGACAAAAACATAGGGAACATTCTT
GTCCTCTGCAAGCAGTGGAAGATGAAGAAGAATCTCCAGAGGCTCGGTAT
CAGCAGCCATCACAATAAACTCGGAGATACCTCTGTTAAGAGTCTTAGTA
GCTTCATTGGCGCCCTTTTTGAGCTGCTTGTAATTGGCAGCTTGCTGAAC
GAGATCCAGTATCGTGATTGTGAGATTAGAATCTGCTAGCGGGTAAGCTT
TAGGGTTCACTGCTTCTCCTGTCATTTTCGTGGTGGCGGGGACGGAGGCT
AGGGTTTTTGTGGCAGCTAATGAAGCGTACCCT
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