CN188360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ + I V G PS A +GD+++ VK P++ R V+ AV+VR RK RR DG+ + F+DNA VI+N +G+ + GPI +E D + +I S A +V Sbjct: 8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIISLAPEVV 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -3 Query: 292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597 +N ADN+GAK L I V G R VGD+++ VK P+L R V+ AVIVR ++ RRKDG + F+DNA VI+N + +G+ + GPI +E D Sbjct: 8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13 Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -3 Query: 292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597 +N ADN+GA+ + I V G R A +GD+++A VK P++ R +V+ AV+VR RK RR +G+ + F+DNA V++N +G +G+ + GP+ +E D Sbjct: 8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13 Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AV+VR +K RR DG ++ F++NA VI+ G+ +G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3 Query: 301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597 +N ADN+GAK LY I V G G R S VGD+++ +VK+ P+ + K V+ AV+VR +K RR DG ++ F+DN+ V++N E G+ I GP+ +E Sbjct: 8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGA+ + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ G+ +G+ I GP+G+E D Sbjct: 11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGA+ + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ G+ +G+ I GP+G+E D Sbjct: 11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AVIVR +K RR DG ++ F++NA VI+ G+ +G+ I GP+G+E + + RI S A ++ Sbjct: 11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRELREKKFMRIISLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -3 Query: 301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588 ADNTGAK L I V G G R S VGD ++ATVK+ P K V+ AVIVR +K + R DG + F+DNA VI+N +G +G+ I GP+ +E Sbjct: 11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105 The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bpback to top |