CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_SACHY (50S ribosomal protein L14, chloroplastic OS=Saccharum hybrid GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNYTKIVSLAPEVL 123          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PORPU (50S ribosomal protein L14, chloroplastic OS=Porphyra purpurea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 46/120 (38.33%), Postives = 69/120 (57.50%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F+DNA VI+N     +G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRNDGMSIRFDDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIISLAPEVV 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_EMIHU (50S ribosomal protein L14, chloroplastic OS=Emiliania huxleyi GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADN+GAK L  I V G   R        VGD+++  VK   P+L   R  V+ AVIVR ++  RRKDG  + F+DNA VI+N +   +G+ + GPI +E  D
Sbjct:    8 LNVADNSGAKKLMCIRVLGTNRRYGH-----VGDVIIGVVKDATPNLTVKRSDVVRAVIVRTKQSIRRKDGSRLRFDDNATVIINKENNPRGTRVFGPIARELKD 107          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_CHLAT (50S ribosomal protein L14, chloroplastic OS=Chlorokybus atmophyticus GN=rpl14 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.819e-13
Identity = 40/105 (38.10%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADN+GA+ +  I V G   R      A +GD+++A VK   P++   R +V+ AV+VR RK  RR +G+ + F+DNA V++N +G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGARKIMCIRVLGGSQR----QYATIGDVIIAVVKDSVPNMALKRSEVVRAVVVRTRKGLRRDNGMTIRFDDNAAVVINKEGNPRGTRVFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KOCRD (50S ribosomal protein L14 OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.988e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTKKQRRRPDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNFM (50S ribosomal protein L14 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597
            +N ADN+GAK LY I V G  G   R  S  VGD+++ +VK+  P+ + K   V+ AV+VR +K  RR DG ++ F+DN+ V++N   E  G+ I GP+ +E
Sbjct:    8 LNAADNSGAKRLYCIKVLG--GTRKRYAS--VGDIIVVSVKEAIPNAKVKKGDVLKAVVVRTQKEVRRPDGSYIKFDDNSAVLINQAKEPIGTRIFGPVARE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SALTO (50S ribosomal protein L14 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SALAI (50S ribosomal protein L14 OS=Salinispora arenicola (strain CNS-205) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGA+ +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----ASIGDVIVATVKDAIPGAGVKKGDVVKAVVVRTAKEKRRPDGSYIRFDENAAVIIKDGGDPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KINRD (50S ribosomal protein L14 OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 48/116 (41.38%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR +K  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  +  + RI S A  ++
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTKKERRRADGSYIRFDENAAVILRADGDPRGTRIFGPVGRELREKKFMRIISLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_HERA2 (50S ribosomal protein L14 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588
            ADNTGAK L  I V G  G   R  S  VGD ++ATVK+  P    K   V+ AVIVR +K + R DG  + F+DNA VI+N +G  +G+ I GP+ +E
Sbjct:   11 ADNTGAKELLCIRVLG--GTKRRYAS--VGDTIIATVKQANPGGSAKKGEVVRAVIVRVKKGYTRPDGSMIQFDDNAAVIINQQGNPRGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RK14_SACHY3.819e-1336.1350S ribosomal protein L14, chloroplastic OS=Saccha... [more]
RK14_PORPU3.819e-1338.3350S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RK14_EMIHU3.819e-1341.9050S ribosomal protein L14, chloroplastic OS=Emilia... [more]
RK14_CHLAT3.819e-1338.1050S ribosomal protein L14, chloroplastic OS=Chloro... [more]
RL14_KOCRD4.988e-1343.1450S ribosomal protein L14 OS=Kocuria rhizophila (s... [more]
RL14_SYNFM6.514e-1342.1650S ribosomal protein L14 OS=Syntrophobacter fumar... [more]
RL14_SALTO6.514e-1342.1650S ribosomal protein L14 OS=Salinispora tropica (... [more]
RL14_SALAI6.514e-1342.1650S ribosomal protein L14 OS=Salinispora arenicola... [more]
RL14_KINRD6.514e-1341.3850S ribosomal protein L14 OS=Kineococcus radiotole... [more]
RL14_HERA26.514e-1346.4650S ribosomal protein L14 OS=Herpetosiphon auranti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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