CN188360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADN+GAK + I V G GR A +GD +M TVK P +K+V AV+VR K RRKDG ++ F++NA V++N +GE +G+ I GP+ +E D Sbjct: 11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_SORBI (50S ribosomal protein L14, chloroplastic OS=Sorghum bicolor GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E +L + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPKMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNFTKIVSLAPEVL 123
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 43/119 (36.13%), Postives = 73/119 (61.34%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR RK +R++G+ + ++DNA VI++ KG KG+ + G I +E L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_BIGNA (50S ribosomal protein L14, chloroplastic OS=Bigelowiella natans GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13 Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 597 V DN+GAK + I V G KGR N+L + +GD+++ VK+ P+ K ++ AV+VR RK +RK+G+++ F+DNA VIVN + +G+ I GP+ +E D + +I S A ++ Sbjct: 8 VKVVDNSGAKEIVCIRVLG-KGR-NQLSN--IGDIIIGVVKEAIPNTPLKKSDIVRAVVVRTRKGLKRKNGIYIRFDDNAAVIVNKENNPRGTRIFGPVARELRDKSFMKIVSLAPEVI 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_UNCTG (50S ribosomal protein L14 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rplN PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = -3 Query: 301 VNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597 +N ADN+GA+ + V KG+K R A +GD++ A+V+ P K V+ AV+VR K RR DG ++ F+DNA VI+N +GE KG+ I GP+ KE Sbjct: 8 LNVADNSGARKIRCFRVTKGLKRRY-----ASIGDVIHASVQDALPHANVKKGDVVKAVVVRTVKEIRRADGTYIKFDDNATVIINDEGEPKGTRIFGPVAKE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADNTGAK+L +I V G G R S +GD+V+A+VK P + V+ AVIVR K RR DG ++ F+DNA VI+ P + +G+ I GP+ +E D + RI S A +V Sbjct: 11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADNTGAK+L +I V G G R S +GD+V+A+VK P + V+ AVIVR K RR DG ++ F+DNA VI+ P + +G+ I GP+ +E D + RI S A +V Sbjct: 11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 588 ADNTGAK + I V G + A +GD ++A VK+ P++ R V+ AV+VR +K RR+DG+++ F+DNA VIVN +G+ + GP+ +E D + +I S A ++ Sbjct: 11 ADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRDKNYSKIVSLAPEVL 121
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADN+GA+ L I V G + R A +GD+++A VK P++ K V+ AV+VR KP RR G+ + F+DNA VIVN +G +G+ + GP+ +E D Sbjct: 11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARELRD 107
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3 Query: 289 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 597 +N ADN+GA+ L I V G G A +GD+++A +K P + R +V+ AVIVR RK ++ DG+ + ++DNA VI++ KG KG+ + G + +E +L Sbjct: 8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELREL 110 The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bpback to top |