CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CHLPB (50S ribosomal protein L14 OS=Chlorobium phaeobacteroides (strain BS1) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 44/102 (43.14%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADN+GAK +  I V G  GR      A +GD +M TVK   P     +K+V  AV+VR  K  RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----ASLGDQIMVTVKAAVPGGVVKKKEVTKAVVVRCAKEKRRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_SORBI (50S ribosomal protein L14, chloroplastic OS=Sorghum bicolor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 43/119 (36.13%), Postives = 71/119 (59.66%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPKMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELRELNFTKIVSLAPEVL 123          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_FAGEA (50S ribosomal protein L14, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 43/119 (36.13%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA VI++ KG  KG+ + G I +E   L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRIIGASNRRY----AHIGDIIVAVIKEAIPNMPLERSEVIRAVIVRTRKELKRENGMIIRYDDNAAVIIDQKGNPKGTRVFGAIARELRQLNFTKIVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_BIGNA (50S ribosomal protein L14, chloroplastic OS=Bigelowiella natans GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.514e-13
Identity = 46/119 (38.66%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 597
            V   DN+GAK +  I V G KGR N+L +  +GD+++  VK+  P+   K   ++ AV+VR RK  +RK+G+++ F+DNA VIVN +   +G+ I GP+ +E  D  + +I S A  ++
Sbjct:    8 VKVVDNSGAKEIVCIRVLG-KGR-NQLSN--IGDIIIGVVKEAIPNTPLKKSDIVRAVVVRTRKGLKRKNGIYIRFDDNAAVIVNKENNPRGTRIFGPVARELRDKSFMKIVSLAPEVI 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_UNCTG (50S ribosomal protein L14 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = -3
Query:  301 VNCADNTGAKNLYIISV-KGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597
            +N ADN+GA+ +    V KG+K R      A +GD++ A+V+   P    K   V+ AV+VR  K  RR DG ++ F+DNA VI+N +GE KG+ I GP+ KE
Sbjct:    8 LNVADNSGARKIRCFRVTKGLKRRY-----ASIGDVIHASVQDALPHANVKKGDVVKAVVVRTVKEIRRADGTYIKFDDNATVIINDEGEPKGTRIFGPVAKE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_TROWT (50S ribosomal protein L14 OS=Tropheryma whipplei (strain Twist) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_TROW8 (50S ribosomal protein L14 OS=Tropheryma whipplei (strain TW08/27) GN=rplN PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 50/117 (42.74%), Postives = 69/117 (58.97%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL----RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK+L +I V G  G   R  S  +GD+V+A+VK   P      +  V+ AVIVR  K  RR DG ++ F+DNA VI+ P  + +G+ I GP+ +E  D  + RI S A  +V
Sbjct:   11 ADNTGAKSLSVIRVLG--GSNRRFGS--LGDVVVASVKDAVPGSSAVKKGDVVKAVIVRSTKEVRRTDGSYIRFDDNAAVILRPDNDPRGTRIFGPVARELRDRKFTRIISLAPEVV 123          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PHATR (50S ribosomal protein L14, chloroplastic OS=Phaeodactylum tricornutum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 44/116 (37.93%), Postives = 69/116 (59.48%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 588
            ADNTGAK +  I V G   +      A +GD ++A VK+  P++   R  V+ AV+VR +K  RR+DG+++ F+DNA VIVN     +G+ + GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNTGAKKVMCIRVLGGNKKY-----AKIGDTIIAVVKEALPNMPVKRSDVVRAVVVRTKKSIRRQDGMYIRFDDNAAVIVNMDNNPRGTRVFGPVAREIRDKNYSKIVSLAPEVL 121          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_NEPOL (50S ribosomal protein L14, chloroplastic OS=Nephroselmis olivacea GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 42/102 (41.18%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADN+GA+ L  I V G + R      A +GD+++A VK   P++  K   V+ AV+VR  KP RR  G+ + F+DNA VIVN +G  +G+ + GP+ +E  D
Sbjct:   11 ADNSGARQLMCIRVLGGRKRY-----ASIGDVIIAVVKDAIPNMPVKKSDVVRAVVVRTSKPVRRDTGMLIRFDDNAAVIVNQEGNPRGTRVFGPVARELRD 107          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_MAIZE (50S ribosomal protein L14, chloroplastic OS=Zea mays GN=rpl14 PE=3 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  289 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL 597
            +N ADN+GA+ L  I V G  G       A +GD+++A +K   P +   R +V+ AVIVR RK ++  DG+ + ++DNA VI++ KG  KG+ + G + +E  +L
Sbjct:    8 LNVADNSGARKLMCIRVIGAAGNQRY---ARIGDVIIAVIKDAVPQMPLERSEVIRAVIVRTRKEFKGDDGIIIRYDDNAAVIIDQKGNPKGTRVFGAVAEELREL 110          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RL14_CHLPB6.514e-1343.1450S ribosomal protein L14 OS=Chlorobium phaeobacte... [more]
RK14_SORBI6.514e-1336.1350S ribosomal protein L14, chloroplastic OS=Sorghu... [more]
RK14_FAGEA6.514e-1336.1350S ribosomal protein L14, chloroplastic OS=Fagopy... [more]
RK14_BIGNA6.514e-1338.6650S ribosomal protein L14, chloroplastic OS=Bigelo... [more]
RL14_UNCTG8.508e-1342.7250S ribosomal protein L14 OS=Uncultured termite gr... [more]
RL14_TROWT8.508e-1342.7450S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RL14_TROW88.508e-1342.7450S ribosomal protein L14 OS=Tropheryma whipplei (... [more]
RK14_PHATR8.508e-1337.9350S ribosomal protein L14, chloroplastic OS=Phaeod... [more]
RK14_NEPOL8.508e-1341.1850S ribosomal protein L14, chloroplastic OS=Nephro... [more]
RK14_MAIZE8.508e-1337.7450S ribosomal protein L14, chloroplastic OS=Zea ma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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