CN188360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13 Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = -3 Query: 253 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 615 + + + +N ADN+GA+ + I V G N A +GD+++ VK P++ + ++ AVIVR +K RR DG+ + F+DNA VI+N + +G+ + GPI KE D + +I S A +V Sbjct: 2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRDKNFSKIISLAAEVV 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_PROA2 (50S ribosomal protein L14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADN+GAK + I V G GR A +GD +M TVK P +K V AV+VR K +RKDG ++ F++NA V++N +GE +G+ I GP+ +E D Sbjct: 11 ADNSGAKKVRCIHVFGGTGRRY----AAIGDQIMVTVKAAVPGGVVKKKDVCKAVVVRCAKEKKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_HELMI (50S ribosomal protein L14 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplN PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = -3 Query: 292 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 585 DNTGAK L I V G G R S VGD+++A+VK+ P + V+ AV+VR RKP +R DG ++ F +NA VI+N + KG+ I GP+ +E D Sbjct: 12 DNTGAKELLCIRVLG--GSYRRYAS--VGDIIVASVKEATPGGVVKKGDVVKAVVVRTRKPIKRPDGSYIRFSENAAVIINEQKNPKGTRIFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PORYE (50S ribosomal protein L14, chloroplastic OS=Porphyra yezoensis GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ + I V G PS A +GD+++ VK P++ R V+ AV+VR RK RR DG+ + F DNA VI+N +G+ + GPI +E D + +I S A +V Sbjct: 8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRTDGMSIRFGDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIVSLAPEVV 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_MARPO (50S ribosomal protein L14, chloroplastic OS=Marchantia polymorpha GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12 Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = -3 Query: 301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597 +N ADN+GA+ L I V G R A +GD+++A VK+ P++ + +++ AVIVR K ++R +G + F+DNA V++N +G KG+ + GPI +E Sbjct: 8 LNVADNSGARKLMCIRVIGTSNR----KYANIGDIIIAVVKEAVPNMPIKKSEIVRAVIVRTCKEFKRNNGSIIKFDDNAAVVINQEGNPKGTRVFGPIARE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KOSOT (50S ribosomal protein L14 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplN PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12 Identity = 42/115 (36.52%), Postives = 73/115 (63.48%), Query Frame = -3 Query: 256 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAI 588 ADN+GAK + +I V G R + +GD+V+A+V++ P D++K ++ AV+VR +K RR DG ++ F+DNA VI++ + + KG+ + GP+ +E + + +IAS A + Sbjct: 11 ADNSGAKVIKVIQVSGGSKR----KTGSIGDIVVASVREAVPNTDIKKGDIVRAVVVRTKKEIRRPDGTYIRFDDNAAVIIDKQNQPKGTRVFGPVARELREKGFSKIASLAQEV 121
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_FRASN (50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12 Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGA+ + I V G GR A +GD+++ TVK P R V+ AV+VR +K RR DG ++ F++NA V++ G+ +G+ I GP+G+E D Sbjct: 11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTKKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CYAP8 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 8801) GN=rplN PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12 Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L + V G +GD+++A VK P++ R +++ AVIVR R+P RR G+ + F+DNA VI+N G KG+ + GP+ +E D + +I S A ++ Sbjct: 8 LNVADNSGARKLMCLRVLGT----GNCRYGEIGDVIIAVVKDAIPNMPIKRSEIVRAVIVRTRQPVRRASGMSIRFDDNAAVIINNDGNPKGTRVFGPVARELRDKNYTKIVSLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_AZOPC (50S ribosomal protein L14 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplN PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12 Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = -3 Query: 253 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRKKVMP-AVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 585 DN+GAK + I V G G R S VGD+++ TVK P D++K ++ A+IVR +K RR+DG ++ F+DNA V++N GE++GS I GP+ +E + +I S A ++ Sbjct: 12 DNSGAKEVLCIRVLG--GTRRRYAS--VGDIIVVTVKTVVPSSDIKKGIVSKAIIVRVKKEIRREDGSYIRFDDNACVLLNSTGEIRGSRIFGPVARELRTVNMKIVSLAPEVL 121
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNP6 (50S ribosomal protein L14 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I V G R A VGD+++A VK P++ K V+ AV+VR +K RR G + F+DNA VI+N G +G+ + GP+ +E D + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRDRNFTKIVSLAPEVI 121 The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bpback to top |