CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_GRATL (50S ribosomal protein L14, chloroplastic OS=Gracilaria tenuistipitata var. liui GN=rpl14 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.508e-13
Identity = 44/125 (35.20%), Postives = 72/125 (57.60%), Query Frame = -3
Query:  253 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 615
            + + + +N ADN+GA+ +  I V G     N    A +GD+++  VK   P++   +  ++ AVIVR +K  RR DG+ + F+DNA VI+N +   +G+ + GPI KE  D  + +I S A  +V
Sbjct:    2 IQIQSYLNIADNSGARKIMCIQVLGS----NNPHYANIGDIIIGVVKDALPNMPIKKSDIIRAVIVRTKKTIRRNDGMSIRFDDNAAVIINQENNPRGTRVFGPIAKELRDKNFSKIISLAAEVV 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_PROA2 (50S ribosomal protein L14 OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADN+GAK +  I V G  GR      A +GD +M TVK   P     +K V  AV+VR  K  +RKDG ++ F++NA V++N +GE +G+ I GP+ +E  D
Sbjct:   11 ADNSGAKKVRCIHVFGGTGRRY----AAIGDQIMVTVKAAVPGGVVKKKDVCKAVVVRCAKEKKRKDGSYIRFDENAVVLLNAQGEPRGTRIFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_HELMI (50S ribosomal protein L14 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 44/101 (43.56%), Postives = 61/101 (60.40%), Query Frame = -3
Query:  292 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 585
            DNTGAK L  I V G  G   R  S  VGD+++A+VK+  P     +  V+ AV+VR RKP +R DG ++ F +NA VI+N +   KG+ I GP+ +E  D
Sbjct:   12 DNTGAKELLCIRVLG--GSYRRYAS--VGDIIVASVKEATPGGVVKKGDVVKAVVVRTRKPIKRPDGSYIRFSENAAVIINEQKNPKGTRIFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PORYE (50S ribosomal protein L14, chloroplastic OS=Porphyra yezoensis GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 46/120 (38.33%), Postives = 68/120 (56.67%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPS-ACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ +  I V G        PS A +GD+++  VK   P++   R  V+ AV+VR RK  RR DG+ + F DNA VI+N     +G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKIMCIRVLGTSN-----PSYASIGDVIIGVVKDASPNMPVKRSDVVRAVVVRTRKALRRTDGMSIRFGDNAAVIINQDNNPRGTRVFGPIARELRDKNFSKIVSLAPEVV 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_MARPO (50S ribosomal protein L14, chloroplastic OS=Marchantia polymorpha GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.111e-12
Identity = 39/102 (38.24%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597
            +N ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   + +++ AVIVR  K ++R +G  + F+DNA V++N +G  KG+ + GPI +E
Sbjct:    8 LNVADNSGARKLMCIRVIGTSNR----KYANIGDIIIAVVKEAVPNMPIKKSEIVRAVIVRTCKEFKRNNGSIIKFDDNAAVVINQEGNPKGTRVFGPIARE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_KOSOT (50S ribosomal protein L14 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 42/115 (36.52%), Postives = 73/115 (63.48%), Query Frame = -3
Query:  256 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAI 588
            ADN+GAK + +I V G   R     +  +GD+V+A+V++  P  D++K  ++ AV+VR +K  RR DG ++ F+DNA VI++ + + KG+ + GP+ +E  +  + +IAS A  +
Sbjct:   11 ADNSGAKVIKVIQVSGGSKR----KTGSIGDIVVASVREAVPNTDIKKGDIVRAVVVRTKKEIRRPDGTYIRFDDNAAVIIDKQNQPKGTRVFGPVARELREKGFSKIASLAQEV 121          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_FRASN (50S ribosomal protein L14 OS=Frankia sp. (strain EAN1pec) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 41/102 (40.20%), Postives = 61/102 (59.80%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGA+ +  I V G  GR      A +GD+++ TVK   P     R  V+ AV+VR +K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAREILCIRVLGGSGRRY----AGIGDIIVGTVKDALPGAGVKRGDVVKAVVVRTKKERRRPDGSYIRFDENAAVLIRDGGDPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CYAP8 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 8801) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  + V G            +GD+++A VK   P++   R +++ AVIVR R+P RR  G+ + F+DNA VI+N  G  KG+ + GP+ +E  D  + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCLRVLGT----GNCRYGEIGDVIIAVVKDAIPNMPIKRSEIVRAVIVRTRQPVRRASGMSIRFDDNAAVIINNDGNPKGTRVFGPVARELRDKNYTKIVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_AZOPC (50S ribosomal protein L14 OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=rplN PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.451e-12
Identity = 46/114 (40.35%), Postives = 71/114 (62.28%), Query Frame = -3
Query:  253 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRKKVMP-AVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 585
            DN+GAK +  I V G  G   R  S  VGD+++ TVK   P  D++K ++  A+IVR +K  RR+DG ++ F+DNA V++N  GE++GS I GP+ +E   +  +I S A  ++
Sbjct:   12 DNSGAKEVLCIRVLG--GTRRRYAS--VGDIIVVTVKTVVPSSDIKKGIVSKAIIVRVKKEIRREDGSYIRFDDNACVLLNSTGEIRGSRIFGPVARELRTVNMKIVSLAPEVL 121          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNP6 (50S ribosomal protein L14 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +K  RR  G  + F+DNA VI+N  G  +G+ + GP+ +E  D  + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRDRNFTKIVSLAPEVI 121          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RK14_GRATL8.508e-1335.2050S ribosomal protein L14, chloroplastic OS=Gracil... [more]
RL14_PROA21.111e-1242.1650S ribosomal protein L14 OS=Prosthecochloris aest... [more]
RL14_HELMI1.111e-1243.5650S ribosomal protein L14 OS=Heliobacterium modest... [more]
RK14_PORYE1.111e-1238.3350S ribosomal protein L14, chloroplastic OS=Porphy... [more]
RK14_MARPO1.111e-1238.2450S ribosomal protein L14, chloroplastic OS=Marcha... [more]
RL14_KOSOT1.451e-1236.5250S ribosomal protein L14 OS=Kosmotoga olearia (st... [more]
RL14_FRASN1.451e-1240.2050S ribosomal protein L14 OS=Frankia sp. (strain E... [more]
RL14_CYAP81.451e-1236.1350S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_AZOPC1.451e-1240.3550S ribosomal protein L14 OS=Azobacteroides pseudo... [more]
RL14_SYNP61.895e-1237.8250S ribosomal protein L14 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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