CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNE7 (50S ribosomal protein L14 OS=Synechococcus elongatus (strain PCC 7942) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G   R      A VGD+++A VK   P++  K   V+ AV+VR +K  RR  G  + F+DNA VI+N  G  +G+ + GP+ +E  D  + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRDRNFTKIVSLAPEVI 121          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SULMW (50S ribosomal protein L14 OS=Sulcia muelleri (strain GWSS) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKK---GKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +  ADN+GAK + +I V G K        A +GD ++ ++K+   G    + ++  AV+VR +K  RRKDG ++ F+DNA V++   GEMKG+ I GP+ +E  D  + +I S A  ++
Sbjct:    8 IRVADNSGAKEVLLIRVLGGK------KYAYIGDTIIVSIKEAIAGSSVKKGQLYKAVVVRTKKKIRRKDGSYIRFDDNACVLLTNTGEMKGTRILGPVSRELRDKEYTKIVSLATEVL 120          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SOLUE (50S ribosomal protein L14 OS=Solibacter usitatus (strain Ellin6076) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADN+GA+ L  I  +G  G L     A +GD+V A VK+  PD    + KV+  VIVR RK  RRKDG ++ F+ NA V++N  GE  G+ + GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNSGARRLSCILPRG--GDLGL--RAGLGDVVTAAVKEAAPDSAIKKGKVVRCVIVRMRKETRRKDGTYIRFDSNAAVLINDVGEPVGTRVFGPVARELRDKKFMKIVSLAPEVI 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 588
            ADN+GA++L  I V G   R     SA +GD+++A+VK+  P    K   V+ AV+VR +K  RR+DG ++ F +NAGV++N  G  +G+ I GP+ +E  +  + RI S A  ++
Sbjct:   11 ADNSGARSLLCIRVLGGSKRR----SAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARELREKGYTRIISLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PSINU (50S ribosomal protein L14, chloroplastic OS=Psilotum nudum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = -3
Query:  280 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 585
            DN+GA+ L  I + G     N    A  GD ++A VK+  P++   + +++ AVIVR RK  +R +G+ + F+DNA V++N +G +KG+ + GP+ +E   LW +
Sbjct:   12 DNSGARKLMCIRILGT----NNCKYANTGDTIIAVVKESVPNMPVKKSEIVRAVIVRTRKEMKRDNGIIIRFDDNAAVVINREGNLKGTRVHGPVDRE---LWKK 109          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_LEMMI (50S ribosomal protein L14, chloroplastic OS=Lemna minor GN=rpl14 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12
Identity = 41/119 (34.45%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I + G   R      A +GD+++A +K+  P++   R +V+ AVIVR RK  +R++G+ + ++DNA V+++ +G  KG+ + G I +E  +L + +I S A  ++
Sbjct:    8 LNVADNSGARELMCIRILGASNRRY----ANIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTRKELKRENGMRIRYDDNAAVVIDQEGNPKGTRVFGAIARELRELNFTKIVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEAB (50S ribosomal protein L14 OS=Thermosipho africanus (strain TCF52B) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -3
Query:  301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597
            +N ADN+GAK L +I V G     +R     VGD+V+ +V+   P  DL+K  V+ AVIVR +K  RR DG ++ F+DNA V+++   E KG+ + GP+ KE
Sbjct:    8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDVVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGTYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -3
Query:  301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR  K  RR+DG ++ F++NA VI+   G+ +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -3
Query:  301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P    K   V+ AV+VR  K  RR DG ++ F++NA VI+   GE +G+ I GP+G+E
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12
Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = -3
Query:  301 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 615
            + V   +N ADNTGAK L  I V G   R      A +GD+++ +VK+  PD    + +V+ AV+VR +K  RR DG ++ F++NA VI+      +G+ I GP+ +E
Sbjct:    2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RL14_SYNE71.895e-1237.8250S ribosomal protein L14 OS=Synechococcus elongat... [more]
RL14_SULMW1.895e-1236.1350S ribosomal protein L14 OS=Sulcia muelleri (stra... [more]
RL14_SOLUE1.895e-1240.5250S ribosomal protein L14 OS=Solibacter usitatus (... [more]
RL14_RUBXD1.895e-1238.7950S ribosomal protein L14 OS=Rubrobacter xylanophi... [more]
RK14_PSINU1.895e-1236.1950S ribosomal protein L14, chloroplastic OS=Psilot... [more]
RK14_LEMMI1.895e-1234.4550S ribosomal protein L14, chloroplastic OS=Lemna ... [more]
RL14_THEAB2.475e-1243.1450S ribosomal protein L14 OS=Thermosipho africanus... [more]
RL14_STRGG2.475e-1244.4450S ribosomal protein L14 OS=Streptomyces griseus ... [more]
RL14_NOCSJ2.475e-1244.4450S ribosomal protein L14 OS=Nocardioides sp. (str... [more]
RL14_CARHZ2.475e-1237.9650S ribosomal protein L14 OS=Carboxydothermus hydr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
back to top