CN188360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SYNE7 (50S ribosomal protein L14 OS=Synechococcus elongatus (strain PCC 7942) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 45/119 (37.82%), Postives = 68/119 (57.14%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I V G R A VGD+++A VK P++ K V+ AV+VR +K RR G + F+DNA VI+N G +G+ + GP+ +E D + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVLGSNRRY-----AGVGDVIIAVVKDALPNMPVKKSDVVRAVVVRTKKSLRRDSGNVIRFDDNAAVIINADGNPRGTRVFGPVARELRDRNFTKIVSLAPEVI 121
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SULMW (50S ribosomal protein L14 OS=Sulcia muelleri (strain GWSS) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 43/119 (36.13%), Postives = 70/119 (58.82%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKK---GKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 + ADN+GAK + +I V G K A +GD ++ ++K+ G + ++ AV+VR +K RRKDG ++ F+DNA V++ GEMKG+ I GP+ +E D + +I S A ++ Sbjct: 8 IRVADNSGAKEVLLIRVLGGK------KYAYIGDTIIVSIKEAIAGSSVKKGQLYKAVVVRTKKKIRRKDGSYIRFDDNACVLLTNTGEMKGTRILGPVSRELRDKEYTKIVSLATEVL 120
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_SOLUE (50S ribosomal protein L14 OS=Solibacter usitatus (strain Ellin6076) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 47/116 (40.52%), Postives = 68/116 (58.62%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADN+GA+ L I +G G L A +GD+V A VK+ PD + KV+ VIVR RK RRKDG ++ F+ NA V++N GE G+ + GP+ +E D + +I S A ++ Sbjct: 11 ADNSGARRLSCILPRG--GDLGL--RAGLGDVVTAAVKEAAPDSAIKKGKVVRCVIVRMRKETRRKDGTYIRFDSNAAVLINDVGEPVGTRVFGPVARELRDKKFMKIVSLAPEVI 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_RUBXD (50S ribosomal protein L14 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplN PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 45/116 (38.79%), Postives = 71/116 (61.21%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 588 ADN+GA++L I V G R SA +GD+++A+VK+ P K V+ AV+VR +K RR+DG ++ F +NAGV++N G +G+ I GP+ +E + + RI S A ++ Sbjct: 11 ADNSGARSLLCIRVLGGSKRR----SAGIGDVIVASVKEATPGGAVKKGDVVRAVVVRTKKETRREDGSYIRFGENAGVLINSDGSPRGTRIFGPVARELREKGYTRIISLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_PSINU (50S ribosomal protein L14, chloroplastic OS=Psilotum nudum GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 38/105 (36.19%), Postives = 64/105 (60.95%), Query Frame = -3 Query: 280 DNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPR 585 DN+GA+ L I + G N A GD ++A VK+ P++ + +++ AVIVR RK +R +G+ + F+DNA V++N +G +KG+ + GP+ +E LW + Sbjct: 12 DNSGARKLMCIRILGT----NNCKYANTGDTIIAVVKESVPNMPVKKSEIVRAVIVRTRKEMKRDNGIIIRFDDNAAVVINREGNLKGTRVHGPVDRE---LWKK 109
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_LEMMI (50S ribosomal protein L14, chloroplastic OS=Lemna minor GN=rpl14 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.895e-12 Identity = 41/119 (34.45%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I + G R A +GD+++A +K+ P++ R +V+ AVIVR RK +R++G+ + ++DNA V+++ +G KG+ + G I +E +L + +I S A ++ Sbjct: 8 LNVADNSGARELMCIRILGASNRRY----ANIGDVIVAVIKEAVPNMPLERSEVIRAVIVRTRKELKRENGMRIRYDDNAAVVIDQEGNPKGTRVFGAIARELRELNFTKIVSLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEAB (50S ribosomal protein L14 OS=Thermosipho africanus (strain TCF52B) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12 Identity = 44/102 (43.14%), Postives = 64/102 (62.75%), Query Frame = -3 Query: 301 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 597 +N ADN+GAK L +I V G +R VGD+V+ +V+ P DL+K V+ AVIVR +K RR DG ++ F+DNA V+++ E KG+ + GP+ KE Sbjct: 8 LNVADNSGAKLLRVIRVMGG----SRRKWGTVGDVVVCSVRDAVPNGDLKKGDVVKAVIVRTKKEIRRPDGTYIRFDDNAAVVLDKYNEPKGTRVFGPVAKE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_STRGG (50S ribosomal protein L14 OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12 Identity = 44/99 (44.44%), Postives = 61/99 (61.62%), Query Frame = -3 Query: 301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AVIVR K RR+DG ++ F++NA VI+ G+ +G+ I GP+G+E Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVIVRTVKERRRQDGSYIRFDENAAVILKNDGDPRGTRIFGPVGRE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_NOCSJ (50S ribosomal protein L14 OS=Nocardioides sp. (strain BAA-499 / JS614) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12 Identity = 44/99 (44.44%), Postives = 60/99 (60.61%), Query Frame = -3 Query: 301 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 588 ADNTGAK + I V G GR A +GD+++ATVK P K V+ AV+VR K RR DG ++ F++NA VI+ GE +G+ I GP+G+E Sbjct: 11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKKGDVVKAVVVRTVKERRRPDGSYIRFDENAAVILKNDGEPRGTRIFGPVGRE 105
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CARHZ (50S ribosomal protein L14 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplN PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.475e-12 Identity = 41/108 (37.96%), Postives = 63/108 (58.33%), Query Frame = -3 Query: 301 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 615 + V +N ADNTGAK L I V G R A +GD+++ +VK+ PD + +V+ AV+VR +K RR DG ++ F++NA VI+ +G+ I GP+ +E Sbjct: 2 IQVQTILNSADNTGAKKLMCIRVLGGSNRRY----ASLGDIIVCSVKEATPDAVVKKGEVVKAVVVRTKKEVRRPDGTYIKFDENAAVIIKDDKSPRGTRIFGPVARE 105 The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bpback to top |