CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_STAMF (50S ribosomal protein L14P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.220e-35
Identity = 74/140 (52.86%), Postives = 102/140 (72.86%), Query Frame = -3
Query:  253 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 672
            M K+G+G  A ++ R++ GL V + V  ADN+GAK + II V G KGRL R+P A +GD+V+ TVKKG P++RK+V+ AVIVRQ++P+RR DG ++ FEDNA  IV P+G  KGS I GPI KE A+ WP++A+ A  +V
Sbjct:    1 MPKKGKGKPAFSRRRIATGLQVGSYVRVADNSGAKLVKIIGVPGYKGRLRRIPPAGIGDLVVVTVKKGTPEMRKQVVKAVIVRQKRPFRRPDGTWVAFEDNAVAIVTPEGTPKGSEIRGPIAKEVAERWPQLANIATIVV 140          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEAC (50S ribosomal protein L14P OS=Thermoplasma acidophilum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.718e-35
Identity = 67/126 (53.17%), Postives = 95/126 (75.40%), Query Frame = -3
Query:  253 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 630
            R + GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM MA+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+ IV
Sbjct:    7 RQTRGLPLGANITCADNTGARSISLIDVKAWHGKARRIPAAGVGDMFMASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVQFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL23_ENCCU (60S ribosomal protein L23 OS=Encephalitozoon cuniculi GN=RPL23 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.636e-35
Identity = 67/127 (52.76%), Postives = 97/127 (76.38%), Query Frame = -3
Query:  256 KFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAI 636
            +++M+ G+ V   + CADN+GAK L  I VK  +GRLNRLP+A  GD+ + +VKKGKP+LRKKV  A+++RQ+K WRR DG  + FEDNA V++N KGE++G+ I GP+ +E AD+WP+I+S A++I
Sbjct:   19 RYKMTRGIQVETLMKCADNSGAKILRCIGVKRYRGRLNRLPAAAPGDICVVSVKKGKPELRKKVHYAILIRQKKIWRRTDGSHIMFEDNAAVLINNKGELRGAQIAGPVPREVADMWPKISSQASSI 145          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEVO (50S ribosomal protein L14P OS=Thermoplasma volcanium GN=rpl14p PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 7.908e-35
Identity = 69/133 (51.88%), Postives = 98/133 (73.68%), Query Frame = -3
Query:  253 GSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 651
            G AG + R   GLP+ A + CADNTGA+++ +I VK   G+  R+P+A VGDM +A+VKKG P++R KV+ AV++RQ++P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ A+ IV
Sbjct:    3 GIAGREIR---GLPLGANIVCADNTGARSISLIDVKAYHGKARRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVIRQKRPYRRPDGTMVEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAIASIIV 132          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_HYPBU (50S ribosomal protein L14P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.762e-34
Identity = 71/137 (51.82%), Postives = 99/137 (72.26%), Query Frame = -3
Query:  253 RGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 663
            +G  G AG +  ++ GL V + V  ADN+GAK   II V G KGRL R+P A VGDMV+ TVKKG P++RK+V+ A+++RQR+P+RR DG ++ FEDNA VIV+P G  KGS I GP+ +E A+ WP++A+ A+ I+
Sbjct:    3 KGAAG-AGPRRHIAAGLQVGSYVKVADNSGAKEAMIIGVIGYKGRLRRIPPAAVGDMVVVTVKKGTPEMRKQVVRAIVIRQRRPYRRPDGTWIAFEDNAVVIVSPDGTPKGSEIRGPVAREAAERWPKVANIASIII 138          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_METKA (50S ribosomal protein L14P OS=Methanopyrus kandleri GN=rpl14p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.005e-34
Identity = 73/121 (60.33%), Postives = 90/121 (74.38%), Query Frame = -3
Query:  253 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 615
            LPV A + CADNTGA+ L II+VKG KG   RLP+A +GDMV+ +VK+G PD+RK+V+ AVIVRQRK +RR DG  + FEDNA VIV P G  +GS I GP+ KE A+ WPRI S A+ IV
Sbjct:   13 LPVGARLVCADNTGARELQIIAVKGYKGVRRRLPNAGIGDMVVCSVKEGTPDMRKEVVNAVIVRQRKEYRRPDGTRVKFEDNAAVIVTPDGAPRGSEIRGPVAKEAAERWPRIGSIASIIV 133          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_AERPE (50S ribosomal protein L14P OS=Aeropyrum pernix GN=rpl14p PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.925e-34
Identity = 72/140 (51.43%), Postives = 101/140 (72.14%), Query Frame = -3
Query:  253 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 672
            M+K+ + G   +++ ++ GL V + V  ADN+GAK + IISV  +K RL RLPSA VGD+V+ +VKKG P +R++V+ AV+VRQR+P+RR DG ++ FEDNA VIVNP G  +GS + GPI +E A+ WPR+A  A  IV
Sbjct:    1 MAKKKKYGVVVSRYGVNTGLQVGSYVPVADNSGAKEVMIISVPQVKTRLRRLPSAGVGDLVVVSVKKGTPQMRRQVVYAVVVRQRRPFRRPDGTWVSFEDNAVVIVNPDGTPRGSEVRGPIAREAAERWPRVAKIATMIV 140          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_METTH (50S ribosomal protein L14P OS=Methanobacterium thermoautotrophicum GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.544e-33
Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = -3
Query:  253 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 630
            +++  LPV A + C DNTGA+ + IISV+G KG   RL +A VGDMV+ +VKKG  D+R++V+ AVIVRQ+K +RR DG+ + FEDNA VIV+P+G +KGS I GP+ KE AD WP + SAA+ IV
Sbjct:    7 KVTRALPVGARLQCVDNTGAREVEIISVRGYKGVRRRLAAAGVGDMVVVSVKKGTVDMRREVLNAVIVRQKKEYRRPDGLRVKFEDNAAVIVSPEGVLKGSEIRGPVAKEAADRWPSVGSAASIIV 132          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_METST (50S ribosomal protein L14P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl14p PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.322e-33
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = -3
Query:  253 MSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 627
            +S  LP+ A + C DNTGA+ + IISVKG KG   RL SA VGDMV+ +VKKG  D+R++V  AV+VRQ+K +RR DG+ + FEDNA VI+   G +KGS I GPI KE ADLWP I SAA+ IV
Sbjct:    8 VSKSLPIGARLKCIDNTGAREVEIISVKGFKGVRRRLASAGVGDMVVISVKKGTADMRREVTTAVVVRQKKEYRRADGLRVKFEDNAAVIITEDGVLKGSEIRGPIAKEAADLWPAIGSAASIIV 132          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_PICTO (50S ribosomal protein L14P OS=Picrophilus torridus GN=rpl14p PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.667e-33
Identity = 66/126 (52.38%), Postives = 92/126 (73.02%), Query Frame = -3
Query:  253 RMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 630
            R + GLP+ A + C DNTGAK + +I VK +     R+P+A VGDM +A+VKKG P++R KV+ AV+VRQR+P+RR DG  + FEDNA V+V P GE++GS I GP+ +E A+ WPRIA+ ++ IV
Sbjct:    7 RETRGLPLGALIPCVDNTGAKMISLIDVKALHTVAKRIPAAGVGDMFIASVKKGTPEMRSKVVYAVVVRQRRPYRRADGTMIEFEDNAAVLVTPDGEVRGSEIKGPVAREAAERWPRIAAISSTIV 132          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RL14_STAMF1.220e-3552.8650S ribosomal protein L14P OS=Staphylothermus mari... [more]
RL14_THEAC2.718e-3553.1750S ribosomal protein L14P OS=Thermoplasma acidoph... [more]
RL23_ENCCU4.636e-3552.7660S ribosomal protein L23 OS=Encephalitozoon cunic... [more]
RL14_THEVO7.908e-3551.8850S ribosomal protein L14P OS=Thermoplasma volcani... [more]
RL14_HYPBU1.762e-3451.8250S ribosomal protein L14P OS=Hyperthermus butylic... [more]
RL14_METKA3.005e-3460.3350S ribosomal protein L14P OS=Methanopyrus kandler... [more]
RL14_AERPE3.925e-3451.4350S ribosomal protein L14P OS=Aeropyrum pernix GN=... [more]
RL14_METTH2.544e-3355.5650S ribosomal protein L14P OS=Methanobacterium the... [more]
RL14_METST3.322e-3357.6050S ribosomal protein L14P OS=Methanosphaera stadt... [more]
RL14_PICTO5.667e-3352.3850S ribosomal protein L14P OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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