CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = -3
Query:  529 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 672
            MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGR
Sbjct:    1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P  +++K +V+ AVIVR +K  RR DG ++ F++NA VI+N  GE +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14
Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G   R      A +GDMV+A VK+  P++   + +++ AVIVR RK  +R +G+ + F+DNA V++N +G  +G+ + GP+ +E  DL + +I S A  ++
Sbjct:    8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14
Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADNTGA+ +  I V G I+G+     +A +GD+++A VK   P+   K   ++ AV+VR RK  RR++G+F+ FEDNA V++N +G  +G+ I GP+ +E  D
Sbjct:    8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14
Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADN+GAK +  I V G  GR      A +GDM++ +VK   P     +K V  AV+VR +K +RRKDG ++ F++NA V++N +GE +G+ I GP+ +E  D  + +I S A  ++
Sbjct:   11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRDKQYMKIISLAPEVI 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  KG+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADN+GAK L  I V G  G   R  S  VGD+++ATVK   P++  K   V+ AVIVR RK  RR+ G+ + F+DNA V++N  G  +G+ + GP+ +E  D
Sbjct:    8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E  D  + +I S A  ++
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13
Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK +  I V G  GR      A +GD ++ATVK   P    K   V+ AV+VR RK  RR DG ++ F++NA VI+   GE +G+ I GP+G+E  D  + +I S A  ++
Sbjct:   11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RL23_ONCVO6.960e-1577.0860S ribosomal protein L23 (Fragment) OS=Onchocerca... [more]
RL14_CLAMS2.025e-1446.0850S ribosomal protein L14 OS=Clavibacter michigane... [more]
RL14_CLAM32.025e-1446.0850S ribosomal protein L14 OS=Clavibacter michigane... [more]
RK14_ZYGCR2.025e-1437.8250S ribosomal protein L14, chloroplastic OS=Zygnem... [more]
RK14_STIHE3.454e-1441.5150S ribosomal protein L14, chloroplastic OS=Stigeo... [more]
RL14_CHLT35.892e-1439.6650S ribosomal protein L14 OS=Chloroherpeton thalas... [more]
RL14_CYAP47.695e-1444.7650S ribosomal protein L14 OS=Cyanothece sp. (strai... [more]
RL14_THEEB1.005e-1343.8150S ribosomal protein L14 OS=Thermosynechococcus e... [more]
RL14_MICLU1.005e-1342.2450S ribosomal protein L14 OS=Micrococcus luteus GN... [more]
RL14_MICLC1.005e-1342.2450S ribosomal protein L14 OS=Micrococcus luteus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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