CN188360
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL23_ONCVO (60S ribosomal protein L23 (Fragment) OS=Onchocerca volvulus GN=RPL23 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 6.960e-15 Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = -3 Query: 529 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGR 672 MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNL++I+V GIKGR Sbjct: 1 MSKRGRGGTSGAKFRISLGLPVGAVMNCADNTGAKNLFVIAVYGIKGR 48
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CLAMS (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=rplN PE=3 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGAK + I V G GR A +GD+++ATVK P +++K +V+ AVIVR +K RR DG ++ F++NA VI+N GE +G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CLAM3 (50S ribosomal protein L14 OS=Clavibacter michiganensis subsp. michiganensis (strain NCPPB 382) GN=rplN PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14 Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = -3 Query: 292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKP--DLRK-KVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588 ADNTGAK + I V G GR A +GD+++ATVK P +++K +V+ AVIVR +K RR DG ++ F++NA VI+N GE +G+ I GP+G+E D Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGEVVKAVIVRTKKETRRPDGSYIKFDENAAVILNSNGEPRGTRIFGPVGRELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_ZYGCR (50S ribosomal protein L14, chloroplastic OS=Zygnema circumcarinatum GN=rpl14 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 2.025e-14 Identity = 45/119 (37.82%), Postives = 74/119 (62.18%), Query Frame = -3 Query: 253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597 +N ADN+GA+ L I V G R A +GDMV+A VK+ P++ + +++ AVIVR RK +R +G+ + F+DNA V++N +G +G+ + GP+ +E DL + +I S A ++ Sbjct: 8 LNVADNSGARKLMCIRVLGSSNR----KYAHIGDMVIAVVKETVPNMPLKKSEIVRAVIVRTRKGLKRDNGMVLRFDDNAAVVINQEGNPRGTRVFGPVARELRDLNFTKIVSLAPEVL 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_STIHE (50S ribosomal protein L14, chloroplastic OS=Stigeoclonium helveticum GN=rpl14 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.454e-14 Identity = 44/106 (41.51%), Postives = 69/106 (65.09%), Query Frame = -3 Query: 292 VNCADNTGAKNLYIISVKG-IKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597 +N ADNTGA+ + I V G I+G+ +A +GD+++A VK P+ K ++ AV+VR RK RR++G+F+ FEDNA V++N +G +G+ I GP+ +E D Sbjct: 8 LNVADNTGARKVMCIRVLGGIQGQ-----TANIGDVIIAVVKDALPNTGVKKSDIVRAVVVRTRKGIRRENGMFIRFEDNAAVVINKEGNPRGTRIFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CHLT3 (50S ribosomal protein L14 OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=rplN PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 5.892e-14 Identity = 46/116 (39.66%), Postives = 71/116 (61.21%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADN+GAK + I V G GR A +GDM++ +VK P +K V AV+VR +K +RRKDG ++ F++NA V++N +GE +G+ I GP+ +E D + +I S A ++ Sbjct: 11 ADNSGAKRVRCIHVLGGTGRRY----ATIGDMIVVSVKSAIPGGAVKKKDVSKAVVVRTKKEYRRKDGSYIRFDENAVVLLNTQGEPRGTRIFGPVARELRDKQYMKIISLAPEVI 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_CYAP4 (50S ribosomal protein L14 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rplN PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.695e-14 Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = -3 Query: 292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597 +N ADN+GAK L I V G G R S VGD+++ATVK P++ K V+ AVIVR RK RR+ G+ + F+DNA V++N G KG+ + GP+ +E D Sbjct: 8 LNVADNSGAKKLLCIRVLG--GGNRRYGS--VGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKAIRRESGMSIRFDDNAAVLINQDGNPKGTRVFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEEB (50S ribosomal protein L14 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 46/105 (43.81%), Postives = 65/105 (61.90%), Query Frame = -3 Query: 292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597 +N ADN+GAK L I V G G R S VGD+++ATVK P++ K V+ AVIVR RK RR+ G+ + F+DNA V++N G +G+ + GP+ +E D Sbjct: 8 LNVADNSGAKKLLCIRVLG--GSNRRYGS--VGDVIIATVKDATPNMAVKKSDVVRAVIVRTRKSIRRESGMSIRFDDNAAVLINQDGNPRGTRVFGPVARELRD 108
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_MICLU (50S ribosomal protein L14 OS=Micrococcus luteus GN=rplN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADNTGAK + I V G GR A +GD ++ATVK P K V+ AV+VR RK RR DG ++ F++NA VI+ GE +G+ I GP+G+E D + +I S A ++ Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKAHVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_MICLC (50S ribosomal protein L14 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rplN PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.005e-13 Identity = 49/116 (42.24%), Postives = 68/116 (58.62%), Query Frame = -3 Query: 253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588 ADNTGAK + I V G GR A +GD ++ATVK P K V+ AV+VR RK RR DG ++ F++NA VI+ GE +G+ I GP+G+E D + +I S A ++ Sbjct: 11 ADNTGAKEILTIRVLGGSGRRY----AGIGDTIVATVKDAIPGGNVKKGDVVKAVVVRTRKQSRRPDGSYIKFDENAAVILKTDGEPRGTRIFGPVGRELRDKKFMKIVSLAPEVI 122 The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 379
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bpback to top |