CN188360

Overview
NameCN188360
Unique NameCN188360
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2659 contig Csv1_Contig2659:1..796. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_LEIXX (50S ribosomal protein L14 OS=Leifsonia xyli subsp. xyli GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGAK L  I V G  GR      A +GD+++ATVK   P    K   V+ AVIVR RK  RR DG ++ F++NA VI+   G+ +G+ I GP+G+E  D
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----AGLGDVIVATVKDAIPGGNVKKGDVVKAVIVRTRKNTRRTDGSYIKFDENAAVILKNDGDPRGTRIFGPVGRELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_BEUC1 (50S ribosomal protein L14 OS=Beutenbergia cavernae (strain ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 48/116 (41.38%), Postives = 68/116 (58.62%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPD---LRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK +  I V G  GR      A +GD+++ATVK   P     R  V+ AV+VR  K  RR DG ++ F++NA V++   GE +G+ I GP+G+E  D  + RI S A  ++
Sbjct:   11 ADNTGAKEILCIRVLGGSGRRY----AGIGDVIVATVKDAIPGGNVKRGDVVKAVVVRTAKERRRPDGSYIRFDENAAVLLKSDGEPRGTRIFGPVGRELRDKKFMRIVSLAPEVI 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_ACAM1 (50S ribosomal protein L14 OS=Acaryochloris marina (strain MBIC 11017) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 45/106 (42.45%), Postives = 64/106 (60.38%), Query Frame = -3
Query:  292 TVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 600
            T+N ADN+GAK L  I V G   R        VGD+++ATVK   P++  K   V+ AVIVR RK   R+ G+ + F+DNA V++NP G  +G+ + GP+ +E  D
Sbjct:    7 TLNVADNSGAKRLLCIRVIGGGNRRY----GGVGDVIIATVKDATPNMPVKKSDVVRAVIVRTRKSICRESGMSIRFDDNAAVLINPDGNPRGTRVFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_STAPU (50S ribosomal protein L14, chloroplastic OS=Staurastrum punctulatum GN=rpl14 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.714e-13
Identity = 44/119 (36.97%), Postives = 72/119 (60.50%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G   R      A +GDM++A VK+  P++   + +V+ AVIVR  K  +R +G+ + F+DNA V+VN +G  +G+ + GP+ +E  D  + +I S A  ++
Sbjct:    8 LNVADNSGARRLMCIRVLGSSNR----KYANIGDMIIAVVKEAVPNMPLKKSEVVRAVIVRTCKGIKRNNGMILRFDDNAAVVVNQEGNPRGTRVFGPVARELRDFNFTKIVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_GRAFK (50S ribosomal protein L14 OS=Gramella forsetii (strain KT0803) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = -3
Query:  292 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 588
            ADNTGAK +  I V G  G   R  S  VGD ++ +VK+  P+   K   V  AV+VR RK  RR DG ++ F+DNA V++ P+GEM+G+ + GP+ +E  D
Sbjct:   11 ADNTGAKEVLAIRVLG--GTKKRYAS--VGDKIVVSVKEATPNGSIKKGAVSTAVVVRTRKEVRRPDGSYIRFDDNACVLLGPQGEMRGTRVFGPVARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_DESVM (50S ribosomal protein L14 OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=rplN PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 47/108 (43.52%), Postives = 66/108 (61.11%), Query Frame = -3
Query:  301 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKE 615
            + V +T+  ADN+GAK +  I V G  G   R   A VGD+V+ +VK+  P  + K   VM AVIVR RK  RR DG ++ F+ NA V++N +GE  G+ I GP+ +E
Sbjct:    2 IQVESTLQVADNSGAKKVACIKVLG--GSKRRY--ATVGDIVVVSVKEALPHCKVKKGDVMQAVIVRTRKEVRRVDGSYIKFDSNAAVLLNKQGEPVGTRIFGPVARE 105          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_CHLRE (50S ribosomal protein L14, chloroplastic OS=Chlamydomonas reinhardtii GN=rpl14 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 43/105 (40.95%), Postives = 65/105 (61.90%), Query Frame = -3
Query:  292 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD 597
            +N ADN+GA+ L  I   G   R     SA +GD+++A VK   P++   R  ++ AVIVR RK  RR++G+ + F+DNA VI+N +G  +G+ + GPI +E  D
Sbjct:    8 LNVADNSGARELMCIRALGGSYR----ESANIGDVIIAVVKDALPNMPVKRSDIVRAVIVRTRKGIRRENGMAIRFDDNAAVIINKEGNPRGTRVFGPIARELRD 108          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_ADICA (50S ribosomal protein L14, chloroplastic OS=Adiantum capillus-veneris GN=rpl14 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.239e-13
Identity = 42/125 (33.60%), Postives = 77/125 (61.60%), Query Frame = -3
Query:  253 LPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 615
            + + + ++ ADN+GA+ L  I V G   R      A +GD+++A VK+  P++   R +V+ AV+VR R+  +R++G+ + F+DNA VI+N +G  +G+ I GP+ +E  +  + R+ S A  ++
Sbjct:    2 IQIQSYLDVADNSGARKLMCIRVLGTGNR----KYADIGDIIIAVVKEAVPNMFLKRSEVVRAVVVRTRRGLKRRNGMVLEFDDNAAVIINQEGNPRGTRIFGPVARELRECNFARVVSLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RL14_THEFY (50S ribosomal protein L14 OS=Thermobifida fusca (strain YX) GN=rplN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 47/116 (40.52%), Postives = 67/116 (57.76%), Query Frame = -3
Query:  253 ADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECAD-LWPRIASAANAIV 588
            ADNTGAK L  I V G  GR      A +GD ++ATVK   P    K   ++ AV+VR  K  RR DG ++ F++NA V++   G+ +G+ I GP+G+E  D  + RI S A  ++
Sbjct:   11 ADNTGAKELLTIRVLGGSGRRY----ASIGDTIVATVKDALPGAGVKKGDIVKAVVVRTTKERRRPDGFYIRFDENAAVLIKDGGDPRGTRIFGPVGRELRDKKFMRIISLAPEVL 122          
BLAST of CN188360 vs. ExPASy Swiss-Prot
Match: RK14_SCEOB (50S ribosomal protein L14, chloroplastic OS=Scenedesmus obliquus GN=rpl14 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.924e-13
Identity = 47/119 (39.50%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  253 VNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKK---VMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADL-WPRIASAANAIV 597
            +N ADN+GA+ L  I V G  GR     +A +GD+++A VK   P++  K   V+ AVIVR  K  RR++G+ + F+DNA V++N +G  +G+ + GPI +E  D  + +I S A  +V
Sbjct:    8 LNVADNSGARKLMCIRVLG-GGR----QTATIGDVIIAVVKDALPNMPLKKSDVVRAVIVRTSKGVRRENGMMLCFDDNAAVVINKEGNPRGTRVFGPIARELRDRNFTKIVSLAPEVV 121          
The following BLAST results are available for this feature:
BLAST of CN188360 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RL14_LEIXX1.714e-1346.0850S ribosomal protein L14 OS=Leifsonia xyli subsp.... [more]
RL14_BEUC11.714e-1341.3850S ribosomal protein L14 OS=Beutenbergia cavernae... [more]
RL14_ACAM11.714e-1342.4550S ribosomal protein L14 OS=Acaryochloris marina ... [more]
RK14_STAPU1.714e-1336.9750S ribosomal protein L14, chloroplastic OS=Staura... [more]
RL14_GRAFK2.239e-1344.1250S ribosomal protein L14 OS=Gramella forsetii (st... [more]
RL14_DESVM2.239e-1343.5250S ribosomal protein L14 OS=Desulfovibrio vulgari... [more]
RK14_CHLRE2.239e-1340.9550S ribosomal protein L14, chloroplastic OS=Chlamy... [more]
RK14_ADICA2.239e-1333.6050S ribosomal protein L14, chloroplastic OS=Adiant... [more]
RL14_THEFY2.924e-1340.5250S ribosomal protein L14 OS=Thermobifida fusca (s... [more]
RK14_SCEOB2.924e-1339.5050S ribosomal protein L14, chloroplastic OS=Scened... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188360 ID=CN188360; Name=CN188360; organism=Citrus sinensis; type=EST; length=794bp
CCCCCCTTTTTTTTAAGTTGATAAAATTGAAACCGTATTGCATCGGAAGT
TGAATTCAAAAACACAATCAGCATGAAAATGATATCAAGATCAACAAAAC
TCCAAACTTTCATACCACTTACAAAACTAGAATAACAAAATCATACAGAA
AGTTCACAGAAAAGCTTTACTCCTTCCTACTATGAAACTTCACCAGATTT
CTTTTTAGTGCAACAAAAAGGATGATATAGGTTATCGGTCTTGAATGTCT
TAAACGATAGCATTGGCTGCACTTGCAATTCTCGGCCACAAATCAGCACA
CTCTTTACCAATTGGACCGGTGATGGCAGAACCCTTCATTTCTCCCTTTG
GATTCACAATAACACCAGCATTATCTTCAAAGTACATGAAGACACCATCC
TTTCTGCGCCATGGCTTGCGCTGCCTTACAATGACGGCGGGCATCACCTT
CTTCCTAAGATCAGGCTTCCCTTTCTTCACGGTAGCCATAACCATGTCTC
CAACACAGGCAGACGGCAAACGGTTGAGGCGACCTTTGATTCCCTTAACT
GAGATGATGTAAAGGTTCTTTGCCCCAGTGTTGTCAGCACAGTTCACAGT
TGCTGCCACTGGCAAACCCAGTGACATCCTGAACTTGTTACCTGCTGATC
CTCCACGTCCTCGCTTCGACATTTTCGCAGCTAAAGGTGACAGCAATAGC
GATCGGGGGCTAGGGTTTTTTTTTTTAACAATTAAACTGCCAAGGGTTTC
CAAAATGGCATTTCCTTATTGTATGGTGCCGCATGCGAATCCCT
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