CN188359

Overview
NameCN188359
Unique NameCN188359
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length660
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: CYB51_SCHPO (Probable cytochrome b5 1 OS=Schizosaccharomyces pombe GN=SPBC29A10.16c PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.200e-16
Identity = 35/79 (44.30%), Postives = 55/79 (69.62%), Query Frame = 1
Query:   64 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 300
            K +   E+  HN+ KD +++I GKVYDV+ F DDHPGG +++L   G+DAT  ++D+GHS +A  +++E Y+GD+   T
Sbjct:    4 KYFEPEEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADELLEEMYIGDLKPGT 82          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA2_ARATH (Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana GN=NIA2 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 33/80 (41.25%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   49 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            M    K+Y+++EV  HN    CW+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++
Sbjct:  538 MNTTAKMYSMSEVKKHNSADSCWIIVHGHIYDCTRFLMDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 616          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA1_PHAVU (Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris GN=NIA1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 34/75 (45.33%), Postives = 53/75 (70.67%), Query Frame = 1
Query:   64 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            K Y+L+EV  HN+R   W+I+ G VYD T+FL DHPGG++ +L   G D T++FE + HS  AK M++++ +G++
Sbjct:  516 KSYSLSEVRRHNNRDSAWIIVNGHVYDCTRFLKDHPGGEDSILLNAGTDCTEEFEAI-HSDKAKKMLEDYRIGEL 589          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA2_SOYBN (Inducible nitrate reductase [NADH] 2 OS=Glycine max GN=INR2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   49 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 297
            M    K YT++EV  HN+    W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++ ++
Sbjct:  513 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTT 594          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA1_SOYBN (Inducible nitrate reductase [NADH] 1 OS=Glycine max GN=INR1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   49 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 297
            M    K YT++EV  HN+    W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ +G++ ++
Sbjct:  509 MNTTSKTYTMSEVRRHNNADSAWIIVHGHVYDWTRFLKDHPGGTDRILINAGTDCTEEFEAI-HSDKAKQMLEDYRIGELTTT 590          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA_LOTJA (Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   64 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            K+Y+L+EV  HN     W+I+ G VYD T+FL DHPGG + +L   G D T++FE + HS  AK M++++ VG++
Sbjct:  522 KMYSLSEVKKHNSPDSAWIIVHGHVYDCTRFLKDHPGGADSILINAGTDCTEEFEAI-HSDKAKKMLEDYRVGEL 595          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 33/80 (41.25%), Postives = 51/80 (63.75%), Query Frame = 1
Query:   49 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            M      YTL+EV  HN  +  W+I+ G VYD T+FL DHPGG + +L   G D T++F+ + HS  AK M++++ +G++
Sbjct:  539 MNTASNTYTLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 617          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   40 FLQMGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            F+     GK +T++EV  H  ++  W+++ G VYD TKFL DHPGG + +L   G D T++F+ + HS  AKA++D + +G++
Sbjct:  242 FMNTTDVGKEFTMSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.267e-14
Identity = 31/80 (38.75%), Postives = 53/80 (66.25%), Query Frame = 1
Query:   49 MGGEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            M    K+Y+++EV  HN  +  W+I+ G +YD T+FL DHPGG + +L   G D T++FE + HS  AK +++++ +G++
Sbjct:  535 MNTASKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CN188359 vs. ExPASy Swiss-Prot
Match: NIA_CHLVU (Nitrate reductase [NADH] (Fragment) OS=Chlorella vulgaris PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.267e-14
Identity = 34/75 (45.33%), Postives = 49/75 (65.33%), Query Frame = 1
Query:   64 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 288
            K +T+AEV  H   +  W +++GKVYD T FL DHPGG + +L   G DATD+F  + HS  AK  + E+Y+G++
Sbjct:  217 KSFTMAEVETHTTMESAWFVVDGKVYDATPFLKDHPGGADSILLVAGIDATDEFNAI-HSLKAKKQLLEYYIGEL 290          
The following BLAST results are available for this feature:
BLAST of CN188359 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB51_SCHPO1.200e-1644.30Probable cytochrome b5 1 OS=Schizosaccharomyces po... [more]
NIA2_ARATH2.955e-1541.25Nitrate reductase [NADH] 2 OS=Arabidopsis thaliana... [more]
NIA1_PHAVU3.859e-1545.33Nitrate reductase [NADH] 1 OS=Phaseolus vulgaris G... [more]
NIA2_SOYBN6.583e-1540.96Inducible nitrate reductase [NADH] 2 OS=Glycine ma... [more]
NIA1_SOYBN1.466e-1440.96Inducible nitrate reductase [NADH] 1 OS=Glycine ma... [more]
NIA_LOTJA2.501e-1445.33Nitrate reductase [NADH] OS=Lotus japonicus GN=NIA... [more]
NIA_CUCMA2.501e-1441.25Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA1_MAIZE2.501e-1439.76Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NIA1_BRANA3.267e-1438.75Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_CHLVU4.267e-1445.33Nitrate reductase [NADH] (Fragment) OS=Chlorella v... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188359 ID=CN188359; Name=CN188359; organism=Citrus sinensis; type=EST; length=660bp
GATAAAAGTTTCAAGCTTTTCCCTTAAAAATCTCACCTTTTTTTACAAAT
GGGCGGAGAGGGCAAGGTATACACTTTGGCTGAGGTCTCTGGGCACAACG
ACCGCAAGGACTGTTGGCTTATCATTGAGGGCAAGGTATATGATGTGACA
AAATTCTTGGATGACCATCCTGGTGGAGACGAGGTATTGTTGTCTGCCAC
AGGAAAGGATGCGACTGACGACTTTGAGGATGTTGGTCACAGTAGCAGTG
CAAAAGCGATGATGGATGAATTCTATGTGGGTGACATTGATTCATCAACC
GTTCCCACCAAGACCAAGTACACCCCTCCCAAGCAGCCTCACTACAACCA
AGACAAGACACCCGAGTTTATTATAAAGCTCCTCCAGTTCCTAGTTCCTC
TGCTAATCTTAGGATTGGCTGTTGGCATCCGCTTCTATACCAAATCCGCT
TAATGATACCTTGCAAGATAAAAATTGGAGAAACATTTACAATAAATCTA
TATCCGTTGCATTGCACCTTGTTTTTACTAGTTGTTTGGAACTATTATCA
CCAGAAAATGTAGGGTTCTTTATCTTTTTTGATGTCATGTGCTTGTGTTT
GATAAGTGACCATTCACTGCCCGCATGACTTGGAATGCAATGATCTATTT
GCAAAAAAAA
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