CN188358

Overview
NameCN188358
Unique NameCN188358
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length658
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_RABIT (Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 1.275e-18
Identity = 40/75 (53.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  372 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 596
            K YTL E+  HN  K  WLI+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   F +G++
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTFIIGEL 84          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_YEAST (Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -3
Query:  360 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSST 596
            KVY+  EV+ HN  ++ W+II+ KVYDV++F D+HPGGDE+++   G+DAT+ F D+GHS  A  ++   Y+GD+D ++
Sbjct:    3 KVYSYQEVAEHNGPENFWIIIDDKVYDVSQFKDEHPGGDEIIMDLGGQDATESFVDIGHSDEALRLLKGLYIGDVDKTS 81          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.175e-18
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  243 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTVXXXXXXXXXKQPHYN-QDKTPEFIIKLLQFLVPLLILGL 596
            K +T AEV+ +N +   W II   VYDVT FL++HPGG+EVL+   GKDAT+ FEDVGHSS A+ MM ++ VG++               +P +N + KT E  +K   +L+P  +LGL
Sbjct:    7 KYFTRAEVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGEL---VAEERSNVPEKSEPTWNTEQKTEESSMK--SWLMP-FVLGL 119          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: NIA_VOLCA (Nitrate reductase [NADH] OS=Volvox carteri GN=NITA PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.710e-18
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  363 GEGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSS 605
            G  + YT+ EV+ HN  + CW +  GKVYD T +LD+HPGG E +L   G DATD+F  + HSS AKAM+ ++Y+GD+ +S
Sbjct:  495 GGPRQYTMEEVAAHNTEESCWFVHGGKVYDATPYLDEHPGGAESILIVAGADATDEFNSI-HSSKAKAMLAQYYIGDLVAS 574          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_RAT (Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  372 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 596
            K YTL E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_MOUSE (Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 38/75 (50.67%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  372 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 596
            K YTL E+  H D K  W+I+  KVYD+TKFL++HPGG+EVL    G DAT++FEDVGHS+ A+ +   + +G++
Sbjct:   10 KYYTLEEIQKHKDSKSTWVILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDARELSKTYIIGEL 84          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB52_SCHPO (Probable cytochrome b5 2 OS=Schizosaccharomyces pombe GN=SPCC16A11.10c PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.845e-18
Identity = 37/75 (49.33%), Postives = 57/75 (76.00%), Query Frame = -3
Query:  372 KVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 596
            K  T+ EV  HN R D +++++ KVYD++KFLD HPGG+EVL+   G+DA+  FEDVGHS  A+ ++++FY+G++
Sbjct:    4 KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHSEDAQELLEKFYIGNL 78          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.102e-17
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = -3
Query:  363 EGKVYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI--DSS 602
            E K +TLA++S H  +   +L I GKVYD T F+D+HPGG+EVL+   G+DAT+ FEDVGHS  A+ +M +  VG+   DSS
Sbjct:    3 ELKSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSS 84          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_NEUCR (Probable cytochrome b5 OS=Neurospora crassa GN=B23L21.190 PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 36/73 (49.32%), Postives = 54/73 (73.97%), Query Frame = -3
Query:  372 YTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDI 590
            +T  +V+ HN +KD +++I  KVYD+TKF+D+HPGG+EVLL   G+D+T+ FEDVGHS  A+  ++   VG +
Sbjct:    5 FTYQDVAEHNTKKDLYVVIHDKVYDITKFVDEHPGGEEVLLDVAGQDSTEAFEDVGHSDEAREALEPLLVGTL 77          
BLAST of CN188358 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.357e-17
Identity = 32/79 (40.51%), Postives = 56/79 (70.89%), Query Frame = -3
Query:  357 VYTLAEVSGHNDRKDCWLIIEGKVYDVTKFLDDHPGGDEVLLSATGKDATDDFEDVGHSSSAKAMMDEFYVGDIDSSTV 593
            +YT  EV+ H    D W+I+ GKVY+++ ++D+HPGG+EV+L   G DAT+ F+D+GHS  A  ++++ Y+G++  + +
Sbjct:   10 IYTHEEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKI 88          
The following BLAST results are available for this feature:
BLAST of CN188358 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CYB5_RABIT1.275e-1853.33Cytochrome b5 OS=Oryctolagus cuniculus GN=CYB5A PE... [more]
CYB5_YEAST2.175e-1846.84Cytochrome b5 OS=Saccharomyces cerevisiae GN=CYB5 ... [more]
CYB5_MUSDO2.175e-1843.70Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
NIA_VOLCA3.710e-1849.38Nitrate reductase [NADH] OS=Volvox carteri GN=NITA... [more]
CYB5_RAT4.845e-1850.67Cytochrome b5 OS=Rattus norvegicus GN=Cyb5a PE=1 S... [more]
CYB5_MOUSE4.845e-1850.67Cytochrome b5 OS=Mus musculus GN=Cyb5a PE=1 SV=2[more]
CYB52_SCHPO4.845e-1849.33Probable cytochrome b5 2 OS=Schizosaccharomyces po... [more]
CYB5_MORAP4.102e-1751.22Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
CYB5_NEUCR5.357e-1749.32Probable cytochrome b5 OS=Neurospora crassa GN=B23... [more]
CYB5_CANTR5.357e-1740.51Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188358 ID=CN188358; Name=CN188358; organism=Citrus sinensis; type=EST; length=658bp
CTTTTTTTTTTCAAAGATCATTGCATTCCAGTCATGCGGGCAGTGAATGG
TCACTTATCAAACACAAGCACATGACATCAAAAAAGATAAAGAACCCTAC
ATTTTCTGGTGATAATAGTTCCAAACAACTAGTAAAAACAAGGTGCAATG
CAACGGATATAGATTTATTGTAAATGTTTCTCCAATTTTTATCTTGCAAG
GTATCATTAAGCGGATTTGGTATAGAAGCGGATGCCAACAGCCAATCCTA
AGATTAGCAGAGGAACTAGGAACTGGAGGAGCTTTATAATAAACTCGGGT
GTCTTGTCTTGGTTGTAGTGAGGCTGCTTGGGAGGGGTGTACTTGGTCTT
GGTGGGAACGGTTGATGAATCAATGTCACCCACATAGAATTCATCCATCA
TCGCTTTTGCACTGCTACTGTGACCAACATCCTCAAAGTCGTCAGTCGCA
TCCTTTCCTGTGGCAGACAACAATACCTCGTCTCCACCAGGATGGTCATC
CAAGAATTTTGTCACATCATATACCTTGCCCTCAATGATAAGCCAACAGT
CCTTGCGGTCGTTGTGCCCAGAGACCTCAGCCAAAGTGTATACCTTGCCC
TCTCCGCCCATTTGTAAAAAAAGGTGAGATTTTTAAGGGAAAAGCTTGAA
ACTTTTAT
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