CN188357

Overview
NameCN188357
Unique NameCN188357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBS (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain SDF) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBC (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain ACICU) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIB5 (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AB0057) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIB3 (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AB307-0294) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_YERE8 (Chaperone protein dnaJ OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 62/195 (31.79%), Postives = 93/195 (47.69%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 707
            YYE+LGV K+A   ++KKAYK+ A+K HPD+  D     E FKE+ +AYE+L+DP+KR  YDQYG  A ++ GMGGG       D                         D+ + + ++LE+   G +K++ + + N                      +G G +V +R  G   +QQ    C  C G+G+ I D
Sbjct:    6 YYEVLGVKKDADEREIKKAYKRLAVKYHPDRNQDENDTGENFKEVKEAYEILTDPQKRAAYDQYGHAAFEQGGMGGGGFGGGGADFTDIFGDVFGDIFGGGRRQRASRGSDLRYNMDLTLEEAVRGVTKEIRIPTLNECDVCHGSGAKPGSSPVTCSTCRGAG-QVHMRQ-GFFTVQQ---ACPTCHGSGQIIKD 195          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_THIDA (Chaperone protein dnaJ OS=Thiobacillus denitrificans (strain ATCC 25259) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 67/200 (33.50%), Postives = 93/200 (46.50%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDAL--KEGMGGGAGAHDPF-DIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQ----MQHPCNECKGTGETIND 707
            YYE+LGV+KNAS E++KKAY+K A+K+HPD+  GD    +KFKE  QAYE+LSD +KR  YDQ+G   +  + GMGGG      F D                         D+ + L++ LE+   GT  K+ +                         Q T       H G   +QQ    +Q  C  C GTG+ ++D
Sbjct:    6 YYEVLGVAKNASDEEIKKAYRKLAMKHHPDRNPGDHAAEDKFKEAKQAYEILSDSDKRAAYDQFGHAGVDPQSGMGGGGFGGGGFSDAFSDIFGDIFGGGGGNRRDRVYRGADLRYNLEIGLEEAARGTETKIRI-------PTLEECGTCHGSGAKPGTQPTTCSACGGH-GQVRVQQGFFSVQQTCPRCGGTGKMVSD 197          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRH---LGPSMIQQMQHPCNECKGTGETIND 707
            YYE+LGV+K+AS +++KKAY+K + K HPD   + G  EKFKE+++AYEVLSD  KR  YDQ+G D  + G G  G G  D                           +D+ + + ++ E+   GT K++S+ ++V                          +VS+     LG    +Q+   C +C+G+G+   +
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSKKTCSYCNGAGRVSVEQNTILGRVRTEQV---CPKCEGSGQEFEE 198          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_CUPTR (Chaperone protein dnaJ OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAG 362
            YYE+LGV KNAS +++KKAY+K A+K HPD+  D     EKFKE  +AYE+LSDPEK+  YDQYG   +   M GG G
Sbjct:    6 YYEVLGVGKNASDDEIKKAYRKLAMKFHPDRNPDSKDAEEKFKEAKEAYEMLSDPEKKAAYDQYGHAGVDPNMAGGFG 83          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPE (Chaperone protein dnaJ OS=Bordetella pertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGE---DALKEGMGGGAG 362
            YYE+LGV+KNAS EDLKKAY+K A+K HPD+  D     EKFKE  +AYEVL D +KR  YD+YG    D    GMGGG G
Sbjct:    6 YYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMG 86          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_BORPA (Chaperone protein dnaJ OS=Bordetella parapertussis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGE---DALKEGMGGGAG 362
            YYE+LGV+KNAS EDLKKAY+K A+K HPD+  D     EKFKE  +AYEVL D +KR  YD+YG    D    GMGGG G
Sbjct:    6 YYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAGMGGGMG 86          
The following BLAST results are available for this feature:
BLAST of CN188357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_ACIBS2.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBC2.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIB52.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIB32.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_YERE83.322e-1831.79Chaperone protein dnaJ OS=Yersinia enterocolitica ... [more]
DNAJ_THIDA3.322e-1833.50Chaperone protein dnaJ OS=Thiobacillus denitrifica... [more]
DNAJ_STAEQ3.322e-1830.10Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_CUPTR3.322e-1856.41Chaperone protein dnaJ OS=Cupriavidus taiwanensis ... [more]
DNAJ_BORPE3.322e-1859.26Chaperone protein dnaJ OS=Bordetella pertussis GN=... [more]
DNAJ_BORPA3.322e-1859.26Chaperone protein dnaJ OS=Bordetella parapertussis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188357 ID=CN188357; Name=CN188357; organism=Citrus sinensis; type=EST; length=720bp
GACGGGCTTTTGGGGGCTCTCCTGTAGCGTTCTCCGCGAGAAAAATAATT
TTCTGGGTCTGTTTCGTTTCTGTGGATTCCTGTTAAGAAACTCAAAACAA
GATGTTTGGAAGAGCACCGAAGAAGAGCAATAATACGAGGTACTATGAGA
TCCTGGGGGTGTCCAAGAACGCTTCCGCTGAGGACTTGAAGAAGGCTTAT
AAAAAAGCTGCCATCAAGAATCATCCCGACAAGGGCGGCGATCCTGAGAA
GTTTAAAGAGTTGGCTCAGGCTTACGAGGTTCTGAGTGATCCTGAGAAGC
GTGAGATATATGATCAGTACGGTGAGGATGCACTCAAGGAAGGAATGGGT
GGTGGCGCTGGCGCCCATGACCCGTTTGATATCTTTTCGTCTTTCTTTGG
CGGCAGCCCATTCGGAGGTGGTAGCAGCAGGGGACGGAGACAGAGGCGGG
GCGAGGACGTGGTTCATCCTTTGAAGGTGTCCTTGGAGGATCTTTATCTG
GGTACCTCGAAGAAGCTCTCACTTTCGCGGAATGTGATATGCTCGAAGTG
CAGTGGCAAAGGGTCAAAATCTGGCGCTTCGATGAAGTGTTCTGGTTGCC
AAGGTACTGGTATGAAGGTCTCGATAAGGCACCTAGGACCCTCTATGATT
CAGCAGATGCAGCATCCTTGCAATGAATGCAAGGGTACCGGTGAGACCAT
CAACGATAAAGATCGCTGCC
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