CN188357

Overview
NameCN188357
Unique NameCN188357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_WIGBR (Chaperone protein dnaJ OS=Wigglesworthia glossinidia brevipalpis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSR 530
            YY+ILG+SKNAS  ++K AYK+ A+K HPD+  G+ E   KFKE+ +AYEVL DP+KR  Y+QYG  A  +G        +  D                         D+ + + +SLE+   G SK++++ +
Sbjct:    6 YYDILGISKNASDREIKTAYKRLAVKFHPDRNPGNLEAESKFKEIKEAYEVLLDPKKRAAYNQYGHTAFDQGSSNTEFTSNA-DFSDIFGDVFGDIFGNNRRKRSNRGSDLQYNINLSLEEAVKGISKEITIPK 138          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_RHILO (Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 59/209 (28.23%), Postives = 95/209 (45.45%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGA---GAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQ------------QMQHPCNECKGTGETIND 707
            +YE LGV K A  ++LK A++K A++ HPD+  GD     KFKE+ +AYE L DP+KR  YD++G  A ++ GM GGA   GA    DI                        D+ + +++SLE+ + G + ++ +  ++                      G+G K   + +  SM               ++  C +C+G G+TI D
Sbjct:    5 FYETLGVQKGADEKELKSAFRKLAMQFHPDRNPGDHSCEHKFKEINEAYETLKDPQKRAAYDRFGHAAFEQGGMNGGAQGFGAGGFADIFEDIFGDMMGGRQRRSSGGRERGADLRYNMEISLEEAFAGKTAQIRVPASI----------------SCTECSGSGAKPGTQPVTCSMCHGHGKVRATQGFFSIERTCPQCQGRGQTIKD 197          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_PROMP (Chaperone protein dnaJ OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDI 383
            +Y+ILGVS++A A  LK AY+K A + HPD   DP   +KFKE+ +AYE L+DPE R  YDQ+GE     G+GG AG  D  D+
Sbjct:    4 FYQILGVSRDADANTLKSAYRKLARQYHPDVNKDPGAEDKFKEIGKAYEALADPETRARYDQFGE----AGIGGAAGMPDMGDM 83          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_CYAA5 (Chaperone protein dnaJ OS=Cyanothece sp. (strain ATCC 51142) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 41/74 (55.41%), Postives = 54/74 (72.97%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP---EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG 353
            YY+ILGV +NAS EDLK+AY++ A K HPD   +P   E+FKE+ +AYEVLS+P+ R  YDQ+GE  +  G GG
Sbjct:    5 YYDILGVDRNASKEDLKRAYRRLARKYHPDVNKEPGAEERFKEINRAYEVLSEPDTRSRYDQFGEAGV-SGAGG 77          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ANATD (Chaperone protein dnaJ OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDAL-----KEGMGGGAG 362
            YYEILGV +NA+ E++K+AY++ A + HPD         EKFKE+ +AYEVLSDPEKR++YDQ+G  A       +G GG +G
Sbjct:    7 YYEILGVPRNATEEEIKRAYRRLAKQYHPDANPGNKEAEEKFKEINEAYEVLSDPEKRKLYDQFGHAAFDPKYGAQGSGGFSG 89          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_SHELP (Chaperone protein dnaJ OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 47/134 (35.07%), Postives = 72/134 (53.73%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG--AGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSL 524
            YYE+LGV ++AS  ++KKAYK+ A+K HPD+  GD      FKE+ +AYE+L+D +K+  YDQ+G   +    GGG   G  D  D+                        D+ + L++SLE+   G +K+L +
Sbjct:    6 YYEVLGVGRDASEREIKKAYKRLAMKFHPDRNPGDKAAEASFKEVKEAYEILTDSDKKAAYDQFGHAGVDPNRGGGGFGGGADFGDVFGDVFGDIFGGGRRGGQRQAARGSDLRYNLELSLEEAVRGLTKELRI 139          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_NITSB (Chaperone protein dnaJ OS=Nitratiruptor sp. (strain SB155-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALK-EGMGG 353
            YYE+L V +NAS E++KKAY+K A+K HPD+  D     EKFK + +AY+VLSD EKR +YDQYG+  L+ +G  G
Sbjct:    6 YYELLEVDRNASFEEIKKAYRKLALKYHPDRNPDNPEAEEKFKLINEAYQVLSDEEKRALYDQYGKAGLENQGFSG 81          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_MAGSA (Chaperone protein dnaJ OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 40/78 (51.28%), Postives = 55/78 (70.51%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG---GDPE-KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAG 362
            YYE+LGV K AS +D+KKAY+K A++ HPD+     D E KFKE+ +AY+VL D +KR  YD++G  A ++G  GG G
Sbjct:    6 YYELLGVEKGASPDDIKKAYRKQAMQFHPDRNPGNADAEQKFKEINEAYDVLKDEQKRAAYDRFGHAAFEQGGPGGGG 83          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_EXISA (Chaperone protein dnaJ OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 58/199 (29.15%), Postives = 97/199 (48.74%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGG---AGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNV-IXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQM--QHPCNECKGTGETINDK 710
            YYE+LG+ K+ASA+D+K+AY+K A + HPD   +    +KFKE+ +AYEVLSD +KR  YD++G +   +  GGG    G  D FD+                       ED  + + +   +   G ++ + L   V                       G+G++   ++   +++ +M  Q PC++C G+G+TI +K
Sbjct:    6 YYEVLGLDKSASAQDIKRAYRKLARQYHPDINQEADAADKFKEIGEAYEVLSDEQKRAQYDRFGFEGANQFGGGGDFQGGFGDIFDM------FFGGGGRRQDPNAPRRGEDYQYVVDLDFMESVTGKTETIELEIEVECDTCMGSGAKPGTKPETCNRCGGSGVETVEQN---TILGRMVNQRPCSQCHGSGKTIKEK 195          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_DESVV (Chaperone protein dnaJ OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 42/85 (49.41%), Postives = 58/85 (68.24%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDI 383
            YYE+LGV+++AS +D+K+AY+K A++ HPD+   DPE   KFKE A+AY+VL D EKR  YD++G   +  G G G G     DI
Sbjct:    6 YYEVLGVARDASEDDIKRAYRKLALQYHPDRNPDDPEAEQKFKEAAEAYDVLRDGEKRARYDRFGHAGVGNGGGFGQGFSSNEDI 90          
The following BLAST results are available for this feature:
BLAST of CN188357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_WIGBR3.437e-1535.82Chaperone protein dnaJ OS=Wigglesworthia glossinid... [more]
DNAJ_RHILO3.437e-1528.23Chaperone protein dnaJ OS=Rhizobium loti GN=dnaJ P... [more]
DNAJ_PROMP3.437e-1551.19Chaperone protein dnaJ OS=Prochlorococcus marinus ... [more]
DNAJ_CYAA53.437e-1555.41Chaperone protein dnaJ OS=Cyanothece sp. (strain A... [more]
DNAJ_ANATD3.437e-1550.60Chaperone protein dnaJ OS=Anaerocellum thermophilu... [more]
DNAJ_SHELP4.489e-1535.07Chaperone protein dnaJ OS=Shewanella loihica (stra... [more]
DNAJ_NITSB4.489e-1553.95Chaperone protein dnaJ OS=Nitratiruptor sp. (strai... [more]
DNAJ_MAGSA4.489e-1551.28Chaperone protein dnaJ OS=Magnetospirillum magneti... [more]
DNAJ_EXISA4.489e-1529.15Chaperone protein dnaJ OS=Exiguobacterium sp. (str... [more]
DNAJ_DESVV4.489e-1549.41Chaperone protein dnaJ OS=Desulfovibrio vulgaris s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188357 ID=CN188357; Name=CN188357; organism=Citrus sinensis; type=EST; length=720bp
GACGGGCTTTTGGGGGCTCTCCTGTAGCGTTCTCCGCGAGAAAAATAATT
TTCTGGGTCTGTTTCGTTTCTGTGGATTCCTGTTAAGAAACTCAAAACAA
GATGTTTGGAAGAGCACCGAAGAAGAGCAATAATACGAGGTACTATGAGA
TCCTGGGGGTGTCCAAGAACGCTTCCGCTGAGGACTTGAAGAAGGCTTAT
AAAAAAGCTGCCATCAAGAATCATCCCGACAAGGGCGGCGATCCTGAGAA
GTTTAAAGAGTTGGCTCAGGCTTACGAGGTTCTGAGTGATCCTGAGAAGC
GTGAGATATATGATCAGTACGGTGAGGATGCACTCAAGGAAGGAATGGGT
GGTGGCGCTGGCGCCCATGACCCGTTTGATATCTTTTCGTCTTTCTTTGG
CGGCAGCCCATTCGGAGGTGGTAGCAGCAGGGGACGGAGACAGAGGCGGG
GCGAGGACGTGGTTCATCCTTTGAAGGTGTCCTTGGAGGATCTTTATCTG
GGTACCTCGAAGAAGCTCTCACTTTCGCGGAATGTGATATGCTCGAAGTG
CAGTGGCAAAGGGTCAAAATCTGGCGCTTCGATGAAGTGTTCTGGTTGCC
AAGGTACTGGTATGAAGGTCTCGATAAGGCACCTAGGACCCTCTATGATT
CAGCAGATGCAGCATCCTTGCAATGAATGCAAGGGTACCGGTGAGACCAT
CAACGATAAAGATCGCTGCC
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