CN188357

Overview
NameCN188357
Unique NameCN188357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_OPITP (Chaperone protein dnaJ OS=Opitutus terrae (strain DSM 11246 / PB90-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 50/93 (53.76%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALK--------EGMGGGAGAHDPFDI 383
            YYE+LGV K AS E+LKKAY+K A++ HPDK        E FK+++ AYEVL DPEKR  YD+YG  A +         GM GG G HDPFDI
Sbjct:    6 YYELLGVQKGASEEELKKAYRKKAVQYHPDKNPGNKEAEEMFKKISHAYEVLKDPEKRAAYDRYGPAAFEGAGAGAGMGGMRGGGGFHDPFDI 98          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBP (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 62/146 (42.47%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG--GAGAHDPF-DI---------XXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSR 530
            YYE+LGVSK AS +++K AY+K AIK HPDK  GD E   KFKE  +AYEVL DP+KR+ YDQ+G+  +  G GG  GAGA+  F DI                                 D+ + L+VSLED  LG   K+ + R
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGKAGVNAGAGGGYGAGAYTDFSDIFGDFGDIFSEFFGGGGGGGSRGGGRRSGPQRGSDLRYNLEVSLEDAALGKEYKIEIPR 151          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPBA (Chaperone protein dnaJ OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 62/146 (42.47%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG--GAGAHDPF-DI---------XXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSR 530
            YYE+LGVSK AS +++K AY+K AIK HPDK  GD E   KFKE  +AYEVL DP+KR+ YDQ+G+  +  G GG  GAGA+  F DI                                 D+ + L+VSLED  LG   K+ + R
Sbjct:    6 YYEVLGVSKGASDDEIKSAYRKLAIKYHPDKNKGDKEAEEKFKEATEAYEVLRDPQKRQAYDQFGKAGVNAGAGGGYGAGAYTDFSDIFGDFGDIFSEFFGGGGGGGSRGGGRRSGPQRGSDLRYNLEVSLEDAALGKEYKIEIPR 151          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_LACLA (Chaperone protein dnaJ OS=Lactococcus lactis subsp. lactis GN=dnaJ PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.300e-19
Identity = 63/211 (29.86%), Postives = 92/211 (43.60%), Query Frame = 3
Query:  129 NNTRYYEILGVSKNASAEDLKKAYKKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALK--------------EGMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 710
            NNT YYE LGV KNAS +++KKAY+K + K HPD   + G  EK+KE+ +AYE LSD +KR  YDQYGE                   G GGG+G    F+                        +D+ + + +  E+   G  K++  +R  +                     G   ++++    P    Q Q  C+ C GTG+ I +K
Sbjct:    2 NNTEYYERLGVDKNASQDEIKKAYRKMSKKYHPDLNKEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGGSGGFGGFE--DIFSSFFGGGGAQVNPNAPRQGDDLQYRINLKFEEAIFGVEKQVKYNREELCHTCGGSGAKAGTHPETCHKCGGRGQINVVRDTPLGRMQTQVTCDVCNGTGKEIKEK 210          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNJB6_MOUSE (DnaJ homolog subfamily B member 6 OS=Mus musculus GN=Dnajb6 PE=1 SV=4)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 48/87 (55.17%), Postives = 65/87 (74.71%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE-----KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAH--DPFD 380
            YYE+LGV ++AS ED+KKAY+K A+K HPDK  + +     KFK++A+AYEVLSD +KR+IYD+YG++ L  G GGG G H   PF+
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKQALKWHPDKNPENKEEAERKFKQVAEAYEVLSDAKKRDIYDKYGKEGLNGG-GGGGGIHFDSPFE 89          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE----KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            +Y+ILGV+KNA+A  +KKAY+K A + HPD+  D E    KF++L+ AYEVLSD EKR +YD++GE+ + +  GGG G HDPF
Sbjct:   25 FYKILGVAKNANANQIKKAYRKLAKELHPDRNQDDEMANEKFQDLSSAYEVLSDKEKRAMYDRHGEEGVAKMGGGGGGGHDPF 107          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_PELCD (Chaperone protein dnaJ OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 66/205 (32.20%), Postives = 97/205 (47.32%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDK-GGD---PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHD-------PFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKV--SIRHLGPSMIQQ----MQHPCNECKGTGETIN 704
            YYE+LGV +NAS  ++KKAY+K AIK HPDK  GD    +KFKE+++AY +LSD ++R IYDQYG   L  G GGG G++        PF+                        +D+ + L ++ E+   G   K+ + R+                       GT  +V  + +  G   +QQ    +  PC EC G G+ I+
Sbjct:    6 YYEVLGVHRNASETEIKKAYRKLAIKYHPDKNAGDKAAEDKFKEISEAYSILSDTQQRVIYDQYGHAGLNGG-GGGGGSYSSGGFGGTPFEDLFGDIFGDIFGGRGSQRSRGRRGDDLRYNLSINFEEAAFGLETKIQIPRH----------QTCGTCDGIGAKPGTTPRVCPTCQGAGQVRVQQGYFSLTRPCPECNGEGQIID 199          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_IDILO (Chaperone protein dnaJ OS=Idiomarina loihiensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 45/78 (57.69%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAG 362
            +Y++LGVSK+A+  D+KKAYK+ A+K HPD+  GD +   KFKE+ QAYEVLSDP+KR++YDQYG +A ++   GGAG
Sbjct:    6 FYQVLGVSKDANERDIKKAYKRMAMKYHPDRTEGDKDMEIKFKEIKQAYEVLSDPQKRQMYDQYGHEAFEQARQGGAG 83          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 46/83 (55.42%), Postives = 64/83 (77.11%), Query Frame = 3
Query:  135 TRYYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKE-----GMGGGAGA 365
            T+ Y++LGVS +A+ ++LKK Y+KAA+K HPDK  GD EKFKE+++A+E+L+DP+KREIYDQYG +A +      G GG  GA
Sbjct:    5 TKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPGGPGGA 87          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 46/81 (56.79%), Postives = 62/81 (76.54%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE-----KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAH 368
            YY++LGV +NAS ED+KKAY+K A+K HPDK  D +     +FKE+A+AYEVLSD +KR+IYD+YG++ L    GGG G+H
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPDKNPDNKDEAERRFKEVAEAYEVLSDSKKRDIYDKYGKEGL---TGGGGGSH 81          
The following BLAST results are available for this feature:
BLAST of CN188357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_OPITP2.300e-1953.76Chaperone protein dnaJ OS=Opitutus terrae (strain ... [more]
DNAJ_LEPBP2.300e-1942.47Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_LEPBA2.300e-1942.47Chaperone protein dnaJ OS=Leptospira biflexa serov... [more]
DNAJ_LACLA2.300e-1929.86Chaperone protein dnaJ OS=Lactococcus lactis subsp... [more]
DNJB6_MOUSE3.004e-1955.17DnaJ homolog subfamily B member 6 OS=Mus musculus ... [more]
DNJ20_CAEEL3.004e-1954.22DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
DNAJ_PELCD3.004e-1932.20Chaperone protein dnaJ OS=Pelobacter carbinolicus ... [more]
DNAJ_IDILO3.004e-1957.69Chaperone protein dnaJ OS=Idiomarina loihiensis GN... [more]
SIS1_YEAST3.924e-1955.42Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
DNJB6_XENTR3.924e-1956.79DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188357 ID=CN188357; Name=CN188357; organism=Citrus sinensis; type=EST; length=720bp
GACGGGCTTTTGGGGGCTCTCCTGTAGCGTTCTCCGCGAGAAAAATAATT
TTCTGGGTCTGTTTCGTTTCTGTGGATTCCTGTTAAGAAACTCAAAACAA
GATGTTTGGAAGAGCACCGAAGAAGAGCAATAATACGAGGTACTATGAGA
TCCTGGGGGTGTCCAAGAACGCTTCCGCTGAGGACTTGAAGAAGGCTTAT
AAAAAAGCTGCCATCAAGAATCATCCCGACAAGGGCGGCGATCCTGAGAA
GTTTAAAGAGTTGGCTCAGGCTTACGAGGTTCTGAGTGATCCTGAGAAGC
GTGAGATATATGATCAGTACGGTGAGGATGCACTCAAGGAAGGAATGGGT
GGTGGCGCTGGCGCCCATGACCCGTTTGATATCTTTTCGTCTTTCTTTGG
CGGCAGCCCATTCGGAGGTGGTAGCAGCAGGGGACGGAGACAGAGGCGGG
GCGAGGACGTGGTTCATCCTTTGAAGGTGTCCTTGGAGGATCTTTATCTG
GGTACCTCGAAGAAGCTCTCACTTTCGCGGAATGTGATATGCTCGAAGTG
CAGTGGCAAAGGGTCAAAATCTGGCGCTTCGATGAAGTGTTCTGGTTGCC
AAGGTACTGGTATGAAGGTCTCGATAAGGCACCTAGGACCCTCTATGATT
CAGCAGATGCAGCATCCTTGCAATGAATGCAAGGGTACCGGTGAGACCAT
CAACGATAAAGATCGCTGCC
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