CN188357

Overview
NameCN188357
Unique NameCN188357
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_THISH (Chaperone protein dnaJ OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKL 518
            YYEILGV+KNAS  +LKKA+++ A+K+HPD+  GD E   KFKE  +AYE+L+DP+KR  YDQ+G   +    GGGA     F                          D+ + L+++LE+   GT  K+
Sbjct:    6 YYEILGVAKNASEAELKKAFRRLAMKHHPDRNPGDKESEEKFKEAKEAYEILTDPQKRAAYDQFGHAGVDPSAGGGARGGASFSDIFEDIFGDIFGGGRGGGSRVYRGSDLQYNLELTLEEAVFGTEVKI 135          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 59/196 (30.10%), Postives = 94/196 (47.96%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPD---KGGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRH---LGPSMIQQMQHPCNECKGTGETIND 707
            YYE+LGV+K+AS +++KKAY+K + K HPD   + G  EKFKE+++AYEVLSD  KR  YDQ+G D  + G G  G G  D                           +D+ + + ++ E+   GT K++S+ ++V                          +VS+     LG    +Q+   C +C+G+G+   +
Sbjct:    6 YYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQFGHDGPQGGFGSQGFGGSDFGGFEDIFSSFFGGGSRQRDPNAPRKGDDLQYTMTITFEEAVFGTKKEISIKKDVTCHTCNGDGAKPGTSKKTCSYCNGAGRVSVEQNTILGRVRTEQV---CPKCEGSGQEFEE 198          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_PSYWF (Chaperone protein dnaJ OS=Psychrobacter sp. (strain PRwf-1) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 67/212 (31.60%), Postives = 100/212 (47.17%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDP----EKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMG----GGAGAHDPFDI--XXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKV-------SIRHLGPS---MIQQMQHPCNECKGTGETINDKDR 716
            +YE+LGV ++A   ++KKAY+K A+K HPD+  D     EKFKE + AYEVLSD EKR  YD+ G  A + GMG    GGAGA +  DI                          D+ + +++SLE+   G  K++S +                         G   +V       +++   P+     Q++++PCN+C GTG  + DK R
Sbjct:    6 FYEVLGVDRSADEREIKKAYRKLAMKYHPDRNSDDPDAEEKFKEASMAYEVLSDKEKRSAYDRMGHAAFENGMGGGGFGGAGAGNFQDIFGDIFGNFGDIFGQSRGGGGRQRRGSDLRYVIELSLEEAVRGCKKEISFTAPAPCETCDGKGAKNASDIQTCSTCGGHGQVRMQQGFFAVQQTCPNCGGSGQEIKNPCNDCHGTG--VKDKSR 215          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_PHOLL (Chaperone protein dnaJ OS=Photorhabdus luminescens subsp. laumondii GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 67/194 (34.54%), Postives = 98/194 (50.52%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG-GDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSL-SRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETIND 707
            YYE+LGVSK AS +++KKAYK+ A+K HPD+  GD E   +FKE+ +AYE+L+D +KR  YDQYG  A ++G  GG GA D  DI                        D+ + ++++LE+   G +K++ + +                        QG G +V +R  G   +QQ   PC  C G G+ I D
Sbjct:    6 YYEVLGVSKTASEKEIKKAYKRLAMKYHPDRNQGDKEAESQFKEVKEAYEILTDDQKRAAYDQYGHAAFEQGGMGGGGA-DFSDI--FGDVFGDIFGGGRRQQRPSRGADLRYSMELTLEEAVRGVTKEIRIPTLETCDICHGSGAKAGTSPVTCSTCQGAG-QVHMRQ-GFFTVQQ---PCPHCHGRGQIIKD 191          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_MACCJ (Chaperone protein dnaJ OS=Macrococcus caseolyticus (strain JCSC5402) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 59/193 (30.57%), Postives = 87/193 (45.08%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPD--KGGDPE-KFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDK 710
            YYE+LG+SK AS E++K+AYKK + K HPD  K  D E KFKE+A+AYEVLSD +K+  YDQ+G   + +G G G      F                          D+ + + V+ E+   G  K++S+ + V                      G    V +    P    + +  C +C GTG+   +K
Sbjct:    6 YYEVLGLSKGASKEEIKRAYKKLSKKYHPDINKEADAEDKFKEIAEAYEVLSDDQKKAQYDQFGHAGMGQGAGFGGQDFGGFGGFEDIFSSFFGGGARRDPNAPRQGNDLQYQMNVTFEEAVFGAEKEISVKKEVECDTCDGSGAQPGTNIKTCSTCGGRGNVHVEQNTPFGRVRSERTCPDCGGTGKEFEEK 198          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIN (Chaperone protein dnaJ OS=Leptospira interrogans GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG----GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GAGAHDPFD---------IXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSR 530
            YY+ILGVSK+A+ E++K AY+K AIK HPDK        EKFKE  +AYE+L DP+KR+ YDQ+G+  +  G GG G GA+  F                                   D+ + L+VSLED  LG   K+ + R
Sbjct:    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVSGGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRSSGFGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPR 149          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_LEPIC (Chaperone protein dnaJ OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 56/144 (38.89%), Postives = 75/144 (52.08%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKG----GDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGG-GAGAHDPFD---------IXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSR 530
            YY+ILGVSK+A+ E++K AY+K AIK HPDK        EKFKE  +AYE+L DP+KR+ YDQ+G+  +  G GG G GA+  F                                   D+ + L+VSLED  LG   K+ + R
Sbjct:    6 YYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVSGGAGGFGQGAYTDFSDIFGDFGDIFGDFFGGGRSSGFGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPR 149          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_HAMD5 (Chaperone protein dnaJ OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 67/208 (32.21%), Postives = 97/208 (46.63%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGDPE---KFKELAQAYEVLSDPEKREIYDQYGEDALKE-GMGGGAGAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVVHPLKVSLEDLYLGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGTGMK--------VSIRHLGPSMIQQ----MQHPCNECKGTGETINDKDR 716
            YYEILG++KNA+ +D+K AYK+ A K HPD+  D +   KFKE+ +AYEVLSD +KR  YDQ+G  A ++ GMGGG      F                          D+ + L ++LE+   G SK++ ++  V                     +G+G K         + R +G   +QQ    +Q  C  C G G+ I D  R
Sbjct:    6 YYEILGIAKNANEQDIKDAYKRLAKKYHPDRNKDKDAETKFKEMKEAYEVLSDQQKRAAYDQHGHTAFEQSGMGGGFHNSSNFS---NVFNDVFSDFFGGHQQRTQRGRDLRYTLNLTLEEAVRGASKEIHITTLV----------------HCEHCKGSGAKQGTRPVTCTTCRGVGEVHMQQGFFTIQQTCPRCHGQGQMIKDPCR 194          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBY (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain AYE) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
BLAST of CN188357 vs. ExPASy Swiss-Prot
Match: DNAJ_ACIBT (Chaperone protein dnaJ OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=dnaJ PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.543e-18
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 3
Query:  141 YYEILGVSKNASAEDLKKAYKKAAIKNHPDKGGD----PEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGAGAHDPF 377
            YYE+LGVSK AS +++KKAY+K A+K HPD+  D     EKFKE ++AYE+LSD EKR +YD+ G +A + G GG  G    F
Sbjct:    6 YYEVLGVSKTASDDEIKKAYRKLAMKYHPDRNPDNAEAEEKFKEASEAYEILSDSEKRSMYDRMGHNAFEGGFGGAGGGFGGF 88          
The following BLAST results are available for this feature:
BLAST of CN188357 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ_THISH2.543e-1839.23Chaperone protein dnaJ OS=Thioalkalivibrio sp. (st... [more]
DNAJ_STAES2.543e-1830.10Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_PSYWF2.543e-1831.60Chaperone protein dnaJ OS=Psychrobacter sp. (strai... [more]
DNAJ_PHOLL2.543e-1834.54Chaperone protein dnaJ OS=Photorhabdus luminescens... [more]
DNAJ_MACCJ2.543e-1830.57Chaperone protein dnaJ OS=Macrococcus caseolyticus... [more]
DNAJ_LEPIN2.543e-1838.89Chaperone protein dnaJ OS=Leptospira interrogans G... [more]
DNAJ_LEPIC2.543e-1838.89Chaperone protein dnaJ OS=Leptospira interrogans s... [more]
DNAJ_HAMD52.543e-1832.21Chaperone protein dnaJ OS=Hamiltonella defensa sub... [more]
DNAJ_ACIBY2.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]
DNAJ_ACIBT2.543e-1853.01Chaperone protein dnaJ OS=Acinetobacter baumannii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188357 ID=CN188357; Name=CN188357; organism=Citrus sinensis; type=EST; length=720bp
GACGGGCTTTTGGGGGCTCTCCTGTAGCGTTCTCCGCGAGAAAAATAATT
TTCTGGGTCTGTTTCGTTTCTGTGGATTCCTGTTAAGAAACTCAAAACAA
GATGTTTGGAAGAGCACCGAAGAAGAGCAATAATACGAGGTACTATGAGA
TCCTGGGGGTGTCCAAGAACGCTTCCGCTGAGGACTTGAAGAAGGCTTAT
AAAAAAGCTGCCATCAAGAATCATCCCGACAAGGGCGGCGATCCTGAGAA
GTTTAAAGAGTTGGCTCAGGCTTACGAGGTTCTGAGTGATCCTGAGAAGC
GTGAGATATATGATCAGTACGGTGAGGATGCACTCAAGGAAGGAATGGGT
GGTGGCGCTGGCGCCCATGACCCGTTTGATATCTTTTCGTCTTTCTTTGG
CGGCAGCCCATTCGGAGGTGGTAGCAGCAGGGGACGGAGACAGAGGCGGG
GCGAGGACGTGGTTCATCCTTTGAAGGTGTCCTTGGAGGATCTTTATCTG
GGTACCTCGAAGAAGCTCTCACTTTCGCGGAATGTGATATGCTCGAAGTG
CAGTGGCAAAGGGTCAAAATCTGGCGCTTCGATGAAGTGTTCTGGTTGCC
AAGGTACTGGTATGAAGGTCTCGATAAGGCACCTAGGACCCTCTATGATT
CAGCAGATGCAGCATCCTTGCAATGAATGCAAGGGTACCGGTGAGACCAT
CAACGATAAAGATCGCTGCC
back to top