CN188356

Overview
NameCN188356
Unique NameCN188356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2657 contig Csv1_Contig2657:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB13_HUMAN (DnaJ homolog subfamily B member 13 OS=Homo sapiens GN=DNAJB13 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.295e-15
Identity = 41/116 (35.34%), Postives = 70/116 (60.34%), Query Frame = -3
Query:  396 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAIL 743
            D+ P+ +  DI+F++++K HP+F+R+ ++LF+ + + L +AL      +  LD R L I  N  +++ P  +K +  EGMPL + P  KG L+I F ++FP  LTP + + L   L
Sbjct:  201 DQGPNIIPADIIFIVKEKLHPRFRRENDNLFFVNPIPLGKALTCCTVEVRTLDDRLLNIPIN--DIIHPKYFKKVPGEGMPLPEDPTKKGDLFIFFDIQFPTRLTPQKKQMLRQAL 314          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJB1_HUMAN (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  393 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 743
            D+  + +  DIVFVL+ K H  FKR G D+ Y   +SL EALCG    +  LDGR + +     +V++P   + +  EG+PL + P  +G L I F V FP+ +       LE +LP
Sbjct:  225 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJB1_BOVIN (DnaJ homolog subfamily B member 1 OS=Bos taurus GN=DNAJB1 PE=2 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.920e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  393 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 743
            D+  + +  DIVFVL+ K H  FKR G D+ Y   +SL EALCG    +  LDGR + +     +V++P   + +  EG+PL + P  +G L I F V FP+ +       LE +LP
Sbjct:  225 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJB1_MOUSE (DnaJ homolog subfamily B member 1 OS=Mus musculus GN=Dnajb1 PE=2 SV=3)

HSP 1 Score: 81.2629 bits (199), Expect = 6.426e-15
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = -3
Query:  393 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEAILP 743
            D+  + +  DIVFVL+ K H  FKR G D+ Y   +SL EALCG    +  LDGR + +     +V++P   + +  EG+PL + P  +G L I F V FP+ +       LE +LP
Sbjct:  225 DQTSNNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFK--DVIRPGMRRKVPGEGLPLPKTPEKRGDLVIEFEVIFPERIPVSSRTILEQVLP 339          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: PSI1_SCHPO (Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.393e-15
Identity = 50/119 (42.02%), Postives = 65/119 (54.62%), Query Frame = -3
Query:  402 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSN----PG-EVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALEA 743
            DE PD    DI FVL +K HP F R G+DL  +  LSL EAL GF   ++ +DG++L + S+    PG E+  P         GMPL + P  +G + I   V+FP  LTP Q  A EA
Sbjct:  267 DEKPDGTVQDIQFVLAEKPHPVFTRSGDDLRMQVELSLKEALLGFSKQISTIDGKKLKVSSSLPTQPGYEITYPGF-------GMPLPKNPSQRGNMIIECKVKFPTELTPAQKTAAEA 378          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: XDJ1_SCHPO (DnaJ protein homolog xdj1 OS=Schizosaccharomyces pombe GN=xdj1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 51/134 (38.06%), Postives = 72/134 (53.73%), Query Frame = -3
Query:  354 DEAPDTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGF-QFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDS--LTPDQVKALEAILPSRP-LSGMTDMELD 743
            DEA     GD++  L QK HP F+R G+DL  +  +SL EAL GF +  LT LDGR L      G+++ P     I  EGM    +  ++G LY+   +EFP    +   +++ L  ILPS P +S M D  +D
Sbjct:  243 DEAYGITPGDVILQLHQKPHPVFERLGDDLKAKLKISLAEALTGFNRVILTTLDGRGLEYVQPIGKILHPGDCLIIPGEGMYKDSKTDLRGDLYLEVDIEFPKDGLIGTTEIEILRDILPSIPKVSVMDDTLID 376          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DNJ20_CAEEL (DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=dnj-20 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.583e-13
Identity = 40/103 (38.83%), Postives = 62/103 (60.19%), Query Frame = -3
Query:  411 GDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKA 719
            GD+ F ++ ++HP+F+RKG+DL+   T+SL +AL GF+  + HLDG   ++K    +V  P +     +EGMP  +    KG L + F VEFP +   D+ KA
Sbjct:  236 GDLKFKIRIQKHPRFERKGDDLYTNVTISLQDALNGFEMEIQHLDGH--IVKVQRDKVTWPGARLRKKDEGMPSLEDNNKKGMLVVTFDVEFPKTELSDEQKA 336          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: SIS1_YEAST (Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 39/102 (38.24%), Postives = 57/102 (55.88%), Query Frame = -3
Query:  405 FVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQL-LIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFPDSLTPDQVKALE 707
            FV+Q+K HP FKR G+DL Y   LS  E+L GF   +  +DGR L L +  P   V+P        +GMP  + P  +G L + + V++P SL   Q +A++
Sbjct:  251 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQP---VQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 349          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB11_PONAB (DnaJ homolog subfamily B member 11 OS=Pongo abelii GN=DNAJB11 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = -3
Query:  396 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP-DSLTPDQVKALEAIL 731
            D   GD+ F ++  +HP F+R+G+DL+   T+SL E+L GF+  +THLDG ++ I  +  ++ +P +      EG+P +    +KG L I F V+FP + LT +  + ++ +L
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLL 343          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB11_HUMAN (DnaJ homolog subfamily B member 11 OS=Homo sapiens GN=DNAJB11 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.985e-12
Identity = 39/113 (34.51%), Postives = 68/113 (60.18%), Query Frame = -3
Query:  396 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP-DSLTPDQVKALEAIL 731
            D   GD+ F ++  +HP F+R+G+DL+   T+SL E+L GF+  +THLDG ++ I  +  ++ +P +      EG+P +    +KG L I F V+FP + LT +  + ++ +L
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLL 343          
The following BLAST results are available for this feature:
BLAST of CN188356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DJB13_HUMAN1.295e-1535.34DnaJ homolog subfamily B member 13 OS=Homo sapiens... [more]
DNJB1_HUMAN4.920e-1537.61DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]
DNJB1_BOVIN4.920e-1537.61DnaJ homolog subfamily B member 1 OS=Bos taurus GN... [more]
DNJB1_MOUSE6.426e-1537.61DnaJ homolog subfamily B member 1 OS=Mus musculus ... [more]
PSI1_SCHPO8.393e-1542.02Protein psi1 OS=Schizosaccharomyces pombe GN=psi1 ... [more]
XDJ1_SCHPO1.583e-1338.06DnaJ protein homolog xdj1 OS=Schizosaccharomyces p... [more]
DNJ20_CAEEL1.583e-1338.83DnaJ homolog dnj-20 OS=Caenorhabditis elegans GN=d... [more]
SIS1_YEAST2.985e-1238.24Protein SIS1 OS=Saccharomyces cerevisiae GN=SIS1 P... [more]
DJB11_PONAB2.985e-1234.51DnaJ homolog subfamily B member 11 OS=Pongo abelii... [more]
DJB11_HUMAN2.985e-1234.51DnaJ homolog subfamily B member 11 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188356 ID=CN188356; Name=CN188356; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAAAAGAAGGCATTTCATTGCTTTAAAAAAATCT
AGTAAACAAAAAACACTGCAAACATCAAAGCGTCCACAGCTTTGAGCATC
AGACACATGTGCTATTCAAATTATCTTTCCTTAGTAAATAGGTACTGAAA
TTTAGCTTCATTTTAGTAAGCGTACAACAACTTAAACCACTTTCAATGAT
TGTTCTTCGCCATCATCACTGTTGGGCACACTGCACTCTCTGGGCACCAC
CAGGCATATCTTCGTCCTCCTCATATGCCTCTTGAGCATGAGCCTGCTTC
CTCCGCATCTCCTCCTCAATGTTGACATCATGCAATGTAGTCTCTTCACA
TTCATCTAGCTCCATGTCAGTCATCCCAGACAATGGCCTCGATGGGAGGA
TGGCCTCTAGGGCCTTAACCTGATCTGGGGTCAGAGAATCAGGGAATTCA
ACTGTGAAGTGAATGTACAGTTTCCCCTTCATGAACGGCCTCTGGTACAA
GGGCATACCCTCCTCATTGATAGCCTTGTATGAATCAGGCTTAACAACTT
CCCCAGGATTCGATTTAATCAGAAGTTGCCTCCCATCCAGATGAGTCAGT
GCAAACTGGAAACCGCAGAGGGCCTCAGTTAGCGACAAAGTATGCTCATA
AAAGAGATCTTCTCCCTTTCTCTTGAACTTTGGATGTTCCTTCTGCTGAA
GTACAAATACTATGTCTCCAGTGACTGTATCCGGCGCTTCATCTGGCTTC
ACCAGGG
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