CN188356

Overview
NameCN188356
Unique NameCN188356
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2657 contig Csv1_Contig2657:1..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB11_RAT (DnaJ homolog subfamily B member 11 OS=Rattus norvegicus GN=Dnajb11 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  381 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP-DSLTPDQVKALEAILPSRPL 731
            D   GD+ F ++  +H  F+R+G+DL+   T+SL EAL GF+  +THLDG ++ I  +  ++ +P +      EG+P +    +KG L I F V+FP + LT +  + ++ +L   P+
Sbjct:  233 DGEPGDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAKEGIKQLLKQGPV 348          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB11_MOUSE (DnaJ homolog subfamily B member 11 OS=Mus musculus GN=Dnajb11 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.899e-12
Identity = 40/118 (33.90%), Postives = 69/118 (58.47%), Query Frame = -3
Query:  381 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP-DSLTPDQVKALEAILPSRPL 731
            D   GD+ F ++  +H  F+R+G+DL+   T+SL EAL GF+  +THLDG ++ I  +  ++ +P +      EG+P +    +KG L I F V+FP + LT +  + ++ +L   P+
Sbjct:  233 DGEPGDLRFRIKVVKHRIFERRGDDLYTNVTVSLVEALVGFEMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAKEGIKQLLKQGPV 348          
BLAST of CN188356 vs. ExPASy Swiss-Prot
Match: DJB11_CANFA (DnaJ homolog subfamily B member 11 OS=Canis familiaris GN=DNAJB11 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.092e-12
Identity = 39/113 (34.51%), Postives = 67/113 (59.29%), Query Frame = -3
Query:  396 DTVTGDIVFVLQQKEHPKFKRKGEDLFYEHTLSLTEALCGFQFALTHLDGRQLLIKSNPGEVVKPDSYKAINEEGMPLYQRPFMKGKLYIHFTVEFP-DSLTPDQVKALEAIL 731
            D   GD+ F ++  +HP F+R+G+DL+   T+SL E+L GF   +THLDG ++ I  +  ++ +P +      EG+P +    +KG L I F V+FP + LT +  + ++ +L
Sbjct:  233 DGEPGDLRFRIKVVKHPIFERRGDDLYTNVTISLVESLVGFDMDITHLDGHKVHISRD--KITRPGAKLWKKGEGLPNFDNNNIKGSLIITFDVDFPKEQLTEEAREGIKQLL 343          
The following BLAST results are available for this feature:
BLAST of CN188356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
DJB11_RAT3.899e-1233.90DnaJ homolog subfamily B member 11 OS=Rattus norve... [more]
DJB11_MOUSE3.899e-1233.90DnaJ homolog subfamily B member 11 OS=Mus musculus... [more]
DJB11_CANFA5.092e-1234.51DnaJ homolog subfamily B member 11 OS=Canis famili... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005O11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188356 ID=CN188356; Name=CN188356; organism=Citrus sinensis; type=EST; length=757bp
TTTTTTTTTTTTTTTTTAAAAGAAGGCATTTCATTGCTTTAAAAAAATCT
AGTAAACAAAAAACACTGCAAACATCAAAGCGTCCACAGCTTTGAGCATC
AGACACATGTGCTATTCAAATTATCTTTCCTTAGTAAATAGGTACTGAAA
TTTAGCTTCATTTTAGTAAGCGTACAACAACTTAAACCACTTTCAATGAT
TGTTCTTCGCCATCATCACTGTTGGGCACACTGCACTCTCTGGGCACCAC
CAGGCATATCTTCGTCCTCCTCATATGCCTCTTGAGCATGAGCCTGCTTC
CTCCGCATCTCCTCCTCAATGTTGACATCATGCAATGTAGTCTCTTCACA
TTCATCTAGCTCCATGTCAGTCATCCCAGACAATGGCCTCGATGGGAGGA
TGGCCTCTAGGGCCTTAACCTGATCTGGGGTCAGAGAATCAGGGAATTCA
ACTGTGAAGTGAATGTACAGTTTCCCCTTCATGAACGGCCTCTGGTACAA
GGGCATACCCTCCTCATTGATAGCCTTGTATGAATCAGGCTTAACAACTT
CCCCAGGATTCGATTTAATCAGAAGTTGCCTCCCATCCAGATGAGTCAGT
GCAAACTGGAAACCGCAGAGGGCCTCAGTTAGCGACAAAGTATGCTCATA
AAAGAGATCTTCTCCCTTTCTCTTGAACTTTGGATGTTCCTTCTGCTGAA
GTACAAATACTATGTCTCCAGTGACTGTATCCGGCGCTTCATCTGGCTTC
ACCAGGG
back to top