CK939755

Overview
NameCK939755
Unique NameCK939755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP18_ARATH (Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.136e-59
Identity = 117/243 (48.15%), Postives = 152/243 (62.55%), Query Frame = 1
Query:   55 CVGFLSLVS----SVQGYGG--WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYNVAPPNWSFGQTY 732
            C+  LS+++    S+  Y G  W  A ATFY              YGN+Y  GYG  T ALSTALFN G +CG CFQ+ C + P  C  GS   +VTATN CPP        GGWC+PP  HFDL++P F  IA ++AGI+PV YRRV CK+ GGIRF   G+ Y+ LV + NVGG GD+  +++KGSRT W  MS NWG ++Q+ S L GQSLSF +T+ +   ++ +YN AP +WS G+TY
Sbjct:    9 CLVILSMMAMIGTSMATYAGTPWRTASATFYGDDTGSATMGGACGYGNMYDSGYGVATTALSTALFNEGYACGQCFQLKCVSSPN-CYYGSPATVVTATNICPPNYGQASNNGGWCNPPRVHFDLTKPAFMKIANWKAGIIPVSYRRVACKKIGGIRFKFEGNGYWLLVYVMNVGGPGDIKTMAVKGSRTGWINMSHNWGASYQAFSSLYGQSLSFRLTSYTTRQTIYAYNAAPASWSAGKTY 250          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP21_ARATH (Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.556e-58
Identity = 119/242 (49.17%), Postives = 152/242 (62.81%), Query Frame = 1
Query:   34 MALW-VILCVGFLSLVSSVQGYGG----WINAHATFYXXXXXXXXXXXXXX-YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGG-WCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTG 738
            MA W + +     + V++  G  G    W +A A +Y               YG+L   GYG  TAALSTALFN+G SCGAC++IMC+ +PQ CL GSI +TAT+ CPPG  WC  PN HFDLS P+F  IAQ +A +VPV YRRV C + GG++F + G+     +L  NVGGAGD+ AVS KGS+T W  MSR WGQNW +N  L GQS+S  VTTS+G +    +V P +W FGQT+ G
Sbjct:   17 MATWFMFISYSHGANVAAAPGTNGLDTAWYDARAAYYGDIHGGGTELEGACGYGDLNKHGYGLATAALSTALFNSGASCGACYEIMCSPNPQGCLSGSIKITATDLCPPGSAWCYLPNKHFDLSLPMFIKIAQVKAKMVPVRYRRVPCAKTGGVKFEVKGNPNILTILPYNVGGAGDIIAVSAKGSKTAWVVMSRYWGQNWTTNVNLTGQSVSLRVTTSDGITKDFTDVMPASWGFGQTFDG 258          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP10_ORYSJ (Expansin-A10 OS=Oryza sativa subsp. japonica GN=EXPA10 PE=2 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 5.914e-58
Identity = 108/221 (48.87%), Postives = 143/221 (64.71%), Query Frame = 1
Query:  103 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRG-SIIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTG 738
            W +A A++Y              +G+L   GYG  T  LSTALF  G +CG C+++ C +D ++CL G SI+VTATNFC P        GG C+PPNHHF L    F+ IA ++AG++P+ YRRV C R+GG+RF + G S+F  VLI+NVGGAGDV +V IKG+ + W  M RNWGQ W  NS   GQ LSF +T+S+G ++ +YNV P  W FG+TYTG
Sbjct:   33 WRSAKASYYAADPEDAIGGACG-FGDLGKHGYGMATVGLSTALFERGAACGGCYEVKCVDDLKYCLPGTSIVVTATNFCAPNFGLPADAGGVCNPPNHHFLLPIQSFEKIALWKAGVMPIQYRRVNCLRDGGVRFAVAGRSFFLTVLISNVGGAGDVRSVKIKGTESGWLSMGRNWGQIWHINSDFRGQPLSFELTSSDGKTLTNYNVVPKEWDFGKTYTG 252          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP20_ORYSJ (Expansin-A20 OS=Oryza sativa subsp. japonica GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 220.32 bits (560), Expect = 8.540e-57
Identity = 105/214 (49.07%), Postives = 141/214 (65.89%), Query Frame = 1
Query:  103 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMC--ANDPQWCLRG-SIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYT 735
            W+   ATFY              YGNLY Q YG N AALST LFN+G SCG C+ I+C     P WC  G +I VT TN+   GGWC+    +FD+SQP +++I  Y AGIVP++Y++V+C R GG+RF ING +YF LVL+TN+ G+G + ++S+KGS T W  M+RNWG NWQ  + L GQ+LSF VT++ G ++V  +  P  WSFGQT++
Sbjct:   23 WLPGTATFYGGADGSGTMGGACGYGNLYDQRYGINNAALSTPLFNDGASCGQCYLIICDYGKAPDWCKLGKAITVTGTNY---GGWCNATRPYFDMSQPAWENIGIYSAGIVPILYQQVKCWRYGGVRFIINGFNYFELVLVTNMAGSGSIVSMSVKGSCTGWIQMTRNWGANWQCLAGLAGQALSFNVTSTGGQTIVFDDAVPAGWSFGQTFS 233          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP16_ORYSJ (Expansin-A16 OS=Oryza sativa subsp. japonica GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 5.536e-56
Identity = 105/199 (52.76%), Postives = 133/199 (66.83%), Query Frame = 1
Query:  172 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTG 738
            YG+L    YG  TA +S ALF  G +CG C+++ C N   WCLRGS  ++VTAT+FC P        GGWC+ P  HF++S+  F  +A+ +A IVPV +RRV C R GG+RFTI G + F  VLITNV   G+V AV +KGSRT W PM RNWGQNWQ ++ L GQ LSF VT   G +VV+Y+VAPP+W F QT+ G
Sbjct:   57 YGDLDIFRYGRYTAGVSGALFGRGSACGGCYEVRCVNHVLWCLRGSPTVVVTATDFCAPNLGLSDDYGGWCNFPKEHFEMSEAAFLRVAKAKADIVPVQFRRVSCDRAGGMRFTITGGASFLQVLITNVAADGEVAAVKVKGSRTGWIPMGRNWGQNWQCDADLRGQPLSFEVTGGRGRTVVAYSVAPPDWMFAQTFEG 255          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP20_ARATH (Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.747e-55
Identity = 102/199 (51.26%), Postives = 132/199 (66.33%), Query Frame = 1
Query:  172 YGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTG 738
            YG+L    +   +A LS  LFN G SCGAC ++ C N  +WCL+GS  ++VTAT+FCPP        GGWC+ P  H +LS   F  IA+ RA ++P+ YRRV+C R GG+RF+++G S+F  VLI+NVG  G+V  V +KG  T W PM+RNWGQNW S+  L GQSLSF VT   G ++ SY+VAPP W FG TY G
Sbjct:   53 YGDLRQSSFAGYSAGLSGKLFNRGSSCGACLEVRCVNHIRWCLQGSPSVVVTATDFCPPNSGLSSDYGGWCNFPKEHLELSHAAFTGIAETRAEMIPIQYRRVKCGRRGGLRFSLSGSSHFFQVLISNVGLDGEVVGVKVKGHTTAWIPMARNWGQNWHSSLDLIGQSLSFEVTLKGGKTIASYDVAPPYWRFGMTYQG 251          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP30_ORYSJ (Putative expansin-A30 OS=Oryza sativa subsp. japonica GN=EXPA30 PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.120e-55
Identity = 109/224 (48.66%), Postives = 138/224 (61.61%), Query Frame = 1
Query:  103 WINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP----------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK-GSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTT-SNGHSVVSYNVAPPNWSFGQTY 732
            W  AHATFY              YGNLY+ GYGT+TAALST LF +G  CG C+Q+ C      C RGS  I VTATN CPP          GGWC+PP  HFDLS+P F  +A +RAGIVPV+YRRV C R GG+RF + G+ Y+ L  + NV GAGDV  + +K G    W  MS NWG ++Q+ + L GQ+LSF VT+ + G ++++  V P +W FG TY
Sbjct:   37 WTPAHATFYGDETASETMGGACGYGNLYASGYGTDTAALSTTLFKDGYGCGTCYQMRCVGTAS-CYRGSPAITVTATNLCPPNWAEDPDRGGGGWCNPPRAHFDLSKPAFMRMADWRAGIVPVMYRRVPCARAGGLRFALQGNPYWLLAYVMNVAGAGDVGDMWVKAGGGGGWVRMSHNWGASYQAFAQLGGQALSFKVTSYTTGQTILAAGVTPASWCFGLTY 259          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP26_ORYSJ (Expansin-A26 OS=Oryza sativa subsp. japonica GN=EXPA26 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.083e-43
Identity = 90/217 (41.47%), Postives = 131/217 (60.37%), Query Frame = 1
Query:   97 GGWINAHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPN----HHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIKGS-RTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTY 732
            G W++ HATFY               G   + GYG  TAA+S ALF+NG  CGAC+++   +        +++VTATN  PP     P N     HFDL+ P F  IA+ + G+VPV YR+V C R GGI++TI G+  +N+V++ NVGGAGDV  +++KG+ R +W P+ R+WGQ W++ + L G+SL+F V T +     S+ VAP +W++  TY
Sbjct:   80 GPWVDGHATFYGGRDASGTTEGGAC-GYKDADGYGAMTAAVSPALFDNGAGCGACYELKGDSGK------TVVVTATNQAPP-----PVNGMKGEHFDLTMPAFLSIAEEKLGVVPVSYRKVACVRQGGIKYTITGNPSYNMVMVKNVGGAGDVVKLTVKGTKRVKWTPLQRSWGQLWKTEANLTGESLTFRVMTGDHRKATSWRVAPRDWTYDNTY 284          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXP17_ORYSJ (Expansin-A17 OS=Oryza sativa subsp. japonica GN=EXPA17 PE=2 SV=2)

HSP 1 Score: 162.925 bits (411), Expect = 1.618e-39
Identity = 85/196 (43.37%), Postives = 116/196 (59.18%), Query Frame = 1
Query:  196 YGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGS--IIVTATNFCPP--------GGWCDPPNHHFDLSQPVFQHIAQYRAGIVPVIYRRVRCKRNGGIRFTINGHSYFNLVLITNVGGAGDVHAVSIK--GSRTRWQPMSRNWGQNWQSNSYL-NGQSLSFVVTT--SNGHSVVSYNVAPPNWSFGQTYTG 738
            Y T TAALST LF +G  CG C+++ C   P WC  GS  +++T TN CPP        GGWC+PP HHFD++ P F  +AQ  AGIVPV YRRV C+R GG+RF + G+ Y+ L+ + NVGGAGDV ++S+K  G    W   + NWG  +Q  + L N   L+  +TT  +   +++  +   P W  G  Y G
Sbjct:   85 YSTKTAALSTPLFADGNGCGQCYELRCVKSP-WCNPGSPSVVITGTNLCPPNWYLPNDDGGWCNPPRHHFDMAPPSFLKLAQRVAGIVPVQYRRVPCQRTGGVRFCLQGNHYWLLLYVMNVGGAGDVSSLSVKTSGGGGAWIQAAHNWGITYQVFAALDNSDGLTVKLTTYSTPQQTIIVSDAISPWWITGLCYQG 279          
BLAST of CK939755 vs. ExPASy Swiss-Prot
Match: EXB14_ORYSJ (Putative expansin-B14 OS=Oryza sativa subsp. japonica GN=EXPB14 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.830e-22
Identity = 77/257 (29.96%), Postives = 117/257 (45.53%), Query Frame = 1
Query:   34 MALWVILCVGFLSLVSSVQGY---GGWINAHATFYXXXXXXXXXXXXXXY-GNLYSQGYGTNTAALSTALFNNGLSCGACFQIMCANDPQWCLRGSIIVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQ-------YRAGIVPVIYRRVRCKRNG---GIRFTINGHSYFNLVLITNVGGAGDVHAVSI-----KGSRTRWQPMSRNWGQNWQSNSYLNGQS-----LSFVVTTSNGHSVVSYNVAPPNWSFGQTY 732
            +A   + C    S V+SV  +    GW    AT+Y              Y G++    + +  AA S +++ +G  CG+C+Q+ C+ +P  C    + V  T+ C PGG C     HFDLS   F  +A+         AG +PV Y RV CK  G     R     + Y+  VL+ +  G GD+ AV +      G    W  M ++WG  W+ NS   G +     +S  +T+ +G ++V+ NV P  W  G TY
Sbjct:   12 VAFVALACCVLRSSVASVDHHRKLSGWSIGGATWYGPANGSGTDGGACGYQGDVGQPPFNSMIAAGSPSIYESGKGCGSCYQVKCSGNPS-CSGKPVTVVLTDLC-PGGACLEEPVHFDLSGTAFGAMAKPGQDDQLRNAGKLPVQYARVPCKWQGVDIAFRVDAGSNQYYLAVLVEDEDGDGDLSAVDLMQSGGSGGGGSWAAMQQSWGAVWKYNS---GPAPLQAPMSIRLTSGSGRTLVASNVIPAGWQPGGTY 263          
The following BLAST results are available for this feature:
BLAST of CK939755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 89
Match NameE-valueIdentityDescription
EXP18_ARATH3.136e-5948.15Expansin-A18 OS=Arabidopsis thaliana GN=EXPA18 PE=... [more]
EXP21_ARATH1.556e-5849.17Expansin-A21 OS=Arabidopsis thaliana GN=EXPA21 PE=... [more]
EXP10_ORYSJ5.914e-5848.87Expansin-A10 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ORYSJ8.540e-5749.07Expansin-A20 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP16_ORYSJ5.536e-5652.76Expansin-A16 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP20_ARATH2.747e-5551.26Expansin-A20 OS=Arabidopsis thaliana GN=EXPA20 PE=... [more]
EXP30_ORYSJ6.120e-5548.66Putative expansin-A30 OS=Oryza sativa subsp. japon... [more]
EXP26_ORYSJ1.083e-4341.47Expansin-A26 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP17_ORYSJ1.618e-3943.37Expansin-A17 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXB14_ORYSJ6.830e-2229.96Putative expansin-B14 OS=Oryza sativa subsp. japon... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004746_B08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650002_IIF_B08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939755 ID=CK939755; Name=CK939755; organism=Citrus sinensis; type=EST; length=738bp
GGGGAAACAAACTCTCCTTCCAAGGAAAAAAAAATGGCTCTTTGGGTGAT
TCTTTGTGTTGGGTTTCTCTCATTGGTCTCATCCGTTCAAGGTTATGGAG
GTTGGATTAATGCTCATGCAACTTTCTATGGAGGTGGTGATGCTTCTGGC
ACAATGGGGGGCGCTTGTGGGTACGGCAATTTGTACAGCCAAGGTTATGG
TACTAATACCGCAGCACTTAGCACTGCTTTGTTCAACAATGGCCTAAGTT
GTGGAGCTTGCTTTCAAATTATGTGCGCTAATGACCCGCAATGGTGCCTG
CGTGGCTCCATCATTGTCACTGCCACTAACTTTTGCCCTCCTGGAGGCTG
GTGTGATCCTCCTAACCACCACTTTGATCTCTCTCAGCCTGTCTTCCAAC
ACATTGCCCAGTATAGAGCTGGTATTGTTCCTGTAATCTACAGAAGGGTG
AGATGCAAGAGAAATGGGGGCATAAGGTTCACAATCAATGGCCATTCTTA
CTTCAATTTAGTTCTAATAACAAACGTGGGAGGAGCTGGTGACGTGCATG
CTGTATCCATCAAAGGTTCAAGGACTAGATGGCAACCGATGTCGAGAAAC
TGGGGCCAAAACTGGCAAAGCAACTCGTATCTTAATGGACAAAGCCTCTC
TTTTGTTGTGACCACAAGTAATGGCCACAGTGTTGTTTCTTACAATGTTG
CCCCTCCTAATTGGTCATTTGGGCAGACTTATACCGGC
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