CN188350

Overview
NameCN188350
Unique NameCN188350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5131 contig Csv1_Contig5131:135..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188350 vs. ExPASy Swiss-Prot
Match: CAMA_PSEPU (Putidaredoxin reductase OS=Pseudomonas putida GN=camA PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 57/223 (25.56%), Postives = 94/223 (42.15%), Query Frame = 3
Query:   21 VILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLLPEWYKEKGIELILSTEIVKADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGF 689
            VI+G G++    A      G + G + ++    V P+  P LSKAYL  + TA                 P+ Y  + I+L+  T++   +   + ++ + G    Y  LV+ATG     L         A N  YLR ++DA+ +                  YIGLE++A     N+ V+++      + R+    ++AFYE  +   G+ I  GT   GF
Sbjct:    8 VIVGTGLAGVEVAFGLRASGWE-GNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECI--RRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGF 217          
BLAST of CN188350 vs. ExPASy Swiss-Prot
Match: AIFM1_DICDI (Apoptosis-inducing factor 1, mitochondrial OS=Dictyostelium discoideum GN=aif PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.446e-11
Identity = 59/240 (24.58%), Postives = 104/240 (43.33%), Query Frame = 3
Query:    6 KSFKYVILGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFPEGTARLPGFHVCVGSGGERLL----PEWYKEKGIELILSTEIVKADIASKTLLSATGLIFKYQILVIATGSTVLRLTDFGVEGADAKNIFYLREIDDADKLVEXXXXXXXXXXXXXXXXYIGLELSAALKIN----NIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNA 701
            + FKYVI+GGG +A Y A +   +  K   + +ISKE   PY+RP L+K+    +    +   +    SG ++ L       Y  + ++ I + +++   I  K +L   G + +Y   +IATG    +L        + K I   R ++D  KL E                ++G EL+ A+  N    NI +  ++PE   +  LF   ++ +        G+ +  GT+      N+
Sbjct:   94 EQFKYVIIGGGTAA-YHAIDKILENDKEATILLISKEYEVPYQRPPLTKSLWATKDDNVVNTLNFSDWSGKKQNLLYEQESAYGNEILQFIRTKKVIDLHIDEKLVLLNDGKLIRYDKCLIATGGEPRQLK---FTSTNDKKISTYRTVEDFRKLYE-VVKDGGKHVTVLGGGFLGSELTCAINSNFQDKNIKIDQIFPESGVLSTLFPDYLSKYATEEIIKSGVNVHTGTLIKDVVDNS 328          
The following BLAST results are available for this feature:
BLAST of CN188350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CAMA_PSEPU8.446e-1125.56Putidaredoxin reductase OS=Pseudomonas putida GN=c... [more]
AIFM1_DICDI8.446e-1124.58Apoptosis-inducing factor 1, mitochondrial OS=Dict... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O07_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188350 ID=CN188350; Name=CN188350; organism=Citrus sinensis; type=EST; length=703bp
GAGGGAAGAGCTTCAAGTACGTGATCCTCGGTGGCGGTGTCTCTGCTGGA
TATGCAGCTAGGGAGTTTGCTAAGCAGGGTGTTAAGCCAGGCGAGCTGGC
AATTATCTCCAAAGAAGCAGTTGCTCCGTATGAGCGTCCAGCACTTAGCA
AGGCATATCTTTTCCCTGAGGGAACTGCTAGACTTCCCGGTTTCCATGTC
TGTGTTGGAAGTGGTGGAGAGAGACTGCTTCCTGAGTGGTACAAAGAGAA
AGGAATTGAATTGATCCTCAGCACGGAAATAGTCAAAGCAGATATTGCTT
CCAAGACTCTCCTTAGTGCAACTGGGCTTATCTTTAAGTACCAGATTTTA
GTAATTGCAACTGGTTCTACAGTTTTACGGTTGACTGATTTTGGTGTTGA
AGGTGCTGATGCCAAAAATATCTTCTACTTAAGAGAAATTGATGATGCTG
ATAAGCTGGTTGAAGCAATAAAAGCAAAGAAGAATGGGAAGGCGGTGGTT
GTTGGAGGAGGATACATTGGTCTTGAGCTTAGTGCAGCTTTAAAAATAAA
TAATATTGATGTTAGCATGGTTTATCCTGAACCATGGTGCATGCCTCGTC
TTTTCACTGCGGATATTGCTGCTTTCTATGAGGGTTATTATGCCAATAAA
GGAATCAAAATTATTAAGGGAACAGTTGCTGTTGGATTTACCACAAATGC
CGA
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