EY666034

Overview
NameEY666034
Unique NameEY666034
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length829
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666034 vs. ExPASy Swiss-Prot
Match: WDR1B_XENLA (WD repeat-containing protein 1-B OS=Xenopus laevis GN=wdr1-B PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.010e-11
Identity = 57/230 (24.78%), Postives = 102/230 (44.35%), Query Frame = 3
Query:    9 ILSSLYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE--EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMGATGSLDTCGIIYEI*QP 689
            I +  +DG I  W    G       K ++       ++   +++T   D+ +   +L       + S+ +  QPK   VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DGK+ +YSI+G++L +E      +GAV+ + YSPD +  A  D N+   V+       +  +   H A+   +AWSP+N   A+  +D    ++ +  P
Sbjct:  337 IYTGSHDGHINYWDAETGENNTFTGKGHTNQVSSMDLDGSSQLITCSMDDTLRYTNLISKDYSSSESVKMDVQPK--CVAVGSGGYVVTVCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVSVGGADGKVHLYSIQGNSLKDEGKTLPAKGAVTDLAYSPDGAFLAVTDANKVVTVFSVADGYSEHNSYYGHHAKALSVAWSPDNEHFASSGMDMMVYVWTLSDP 564          
BLAST of EY666034 vs. ExPASy Swiss-Prot
Match: WDR1A_XENLA (WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-A PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.723e-11
Identity = 54/190 (28.42%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  126 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMGATGSLDTCGIIYEI*QP 689
            +++T   D+ +   SL       + S+ +  QPK   VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DGK+ +YSI+G++L +E      +GAV+ + YS D +  A  D N+   V+  V+     KN  Y H A+   +AWSP+N   A+  +D    ++ +  P
Sbjct:  378 QLITCSMDDTLRYTSLISKDYSSSESVKMDVQPK--CVAVGSGGYVVTVCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGADGKVHLYSIQGNSLKDEGKTLPAKGAVTDLAYSHDGAFLAVTDANKVVTVFS-VADGYSEKNSYYGHHAKALSVAWSPDNEHFASSGMDMMVYVWTLSDP 564          
BLAST of EY666034 vs. ExPASy Swiss-Prot
Match: WDR1_XENTR (WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.939e-11
Identity = 64/244 (26.23%), Postives = 114/244 (46.72%), Query Frame = 3
Query:    9 ILSSLYDGLIVKWIQGIG----YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMGATGSLDTCGIIYEI*QPASSPMTIKGAH 722
            I +  +DG I  W    G    + GK    + S++   ++   +++T   D+ +   SL       + S+ +  QPK   VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DG + +YSI+G++L +E      +GAV+ + YS D +  A  D N+   V++ V+     +N+ Y H A+   +AWSP+N   A+  +D    ++ +  P  + + I  AH
Sbjct:  337 IYTGSHDGHINYWDAETGENDTFTGKGHTNQVSRMDLDSS--NQLITCSMDDTVRYTSLTSKDYSSSESVKMDVQPK--CVAVGSGGYVVTLCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGVDGNVHLYSIQGNSLKDEGKSLPVKGAVTDLAYSHDGAFLAVTDANKVVTVFN-VADGYSEQNVYYGHHAKAVSVAWSPDNEHFASSGMDMMVYVWTLSDP-DARIKIPDAH 574          
The following BLAST results are available for this feature:
BLAST of EY666034 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
WDR1B_XENLA1.010e-1124.78WD repeat-containing protein 1-B OS=Xenopus laevis... [more]
WDR1A_XENLA1.723e-1128.42WD repeat-containing protein 1-A OS=Xenopus laevis... [more]
WDR1_XENTR2.939e-1126.23WD repeat-containing protein 1 OS=Xenopus tropical... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-013-B02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666034 ID=EY666034; Name=EY666034; organism=Citrus sinensis; type=EST; length=829bp
CGAAGGTTATCCTGTCCAGCCTTTATGATGGTTTGATAGTTAAATGGATT
CAAGGAATTGGTTATGGTGGTAAATTACAGAGAAAAGAGAACTCTCAAAT
TAAATGTTTTGCAGCTATTGAAGAAGAGATTGTTACGTCTGGATTTGACA
ACAAGATATGGAGAGTTTCCCTACAAGGTGATCAATGTGGATATGCAAAT
TCCATTGATATTGGCAGTCAACCAAAAGACTTAAGTGTTGCCCTTCACTA
CCCCGAACTTGTGTTGGTCTCAACGGATTCTGGAGTTGTTTTGCTCCGCG
GTGCAGAAGTGGTGTCAACCATTAACCTTCGTTTTCCCGTGACAGCTTCT
GCAATCGCGCCTGATGGAAGTGAGGCCATTATAGGTAGTCAAGATGGTAA
ACTACGTGTTTATTCAATCAGAGGGGATACTCTTACAGAAGAAGCTGTCC
TGGAGAAACACCGAGGGGCAGTTAGTGTCATACGCTACTCTCCTGATGTT
TCAATGTTTGCATCGGGTGATGTAAATCGAGAAGCCATAGTGTGGGATCG
TGTCTCCCGAGAGGTAAAGCTTAAGAACATGCTGTACCACACTGCCCGCA
TTAACTGTCTTGCTTGGTCTCCTAATAACAGTATGGGTGCTACTGGATCA
CTTGATACCTGTGGTATTATATATGAAATTTGACAGCCAGCATCTAGCCC
CATGACCATAAAAGGAGCCCACTTGGGGGGGGGTTTAGGGATTAACTTTT
CCCTGGAGAACCATTCGGTGGGTTAACTCTTGGGGAGGATGCTTTGGGCC
CGTGTTTGGAGGGGTGACCCCCAATTTGG
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