CN188344

Overview
NameCN188344
Unique NameCN188344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2107 contig Csv1_Contig2107:141..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_PODAN (40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 108/138 (78.26%), Postives = 126/138 (91.30%), Query Frame = -2 
Query:  210 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 623
            KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   15 KKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEFSISYKPVKHGRPGIGATHSSRFIPLK 152
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_PIG (40S ribosomal protein S15 OS=Sus scrofa GN=RPS15 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_MOUSE (40S ribosomal protein S15 OS=Mus musculus GN=Rps15 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_MESAU (40S ribosomal protein S15 OS=Mesocricetus auratus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_HUMAN (40S ribosomal protein S15 OS=Homo sapiens GN=RPS15 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_CHICK (40S ribosomal protein S15 OS=Gallus gallus GN=RPS15 PE=2 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_BOVIN (40S ribosomal protein S15 OS=Bos taurus GN=RPS15 PE=2 SV=3)

HSP 1 Score: 229.18 bits (583), Expect = 1.894e-59
Identity = 108/140 (77.14%), Postives = 128/140 (91.43%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK++APP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKDAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_XENLA (40S ribosomal protein S15 OS=Xenopus laevis GN=rps15 PE=2 SV=3)

HSP 1 Score: 226.098 bits (575), Expect = 1.604e-58
Identity = 106/140 (75.71%), Postives = 126/140 (90.00%), Query Frame = -2 
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTFKKF++RGVDLD LLDMS +++ +L+ AR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE ++THLR+MII+PEM+GS++GVYNGK FNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFKKFTYRGVDLDQLLDMSYEQVMQLYCARQRRRLNRGLRRKQNSLLKRLRKAKKEAPPMEKPEVIKTHLRDMIILPEMVGSMVGVYNGKAFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_XIPMA (40S ribosomal protein S15 OS=Xiphophorus maculatus GN=rps15 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.315e-57
Identity = 104/138 (75.36%), Postives = 124/138 (89.86%), Query Frame = -2 
Query:  210 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 623
            KKRTF+KF++RGVDLD LLDMS ++L +L+ AR RRR  RGL+RK  +L+K+L KAK+EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEM GHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    8 KKRTFRKFTYRGVDLDQLLDMSYEQLMQLYCARQRRRLNRGLRRKHQSLLKRLPKAKKEAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMCGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145
[Close]
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15B_SCHPO (40S ribosomal protein S15-B OS=Schizosaccharomyces pombe GN=rps15b PE=1 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 7.708e-53
Identity = 98/138 (71.01%), Postives = 115/138 (83.33%), Query Frame = -2 
Query:  210 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 623
            KKRTF+ F++RGV+L+ LLD+S ++L  LF ARARRR  RGL       I+KLRKAK EAP  EKP  V+THLRNMII+PEM+GS++G+YNGK FNQVEI+PEMIGHYL EFSI+YKP KHGRPGIGATHSSRFIPLK
Sbjct:   17 KKRTFRTFAYRGVELEQLLDLSAEQLVDLFHARARRRMLRGLGPNASRFIRKLRKAKSEAPLNEKPATVKTHLRNMIILPEMVGSVVGIYNGKLFNQVEIRPEMIGHYLGEFSITYKPTKHGRPGIGATHSSRFIPLK 154
The following BLAST results are available for this feature:
BLAST of CN188344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_PODAN8.503e-6078.2640S ribosomal protein S15 OS=Podospora anserina GN... [more]
RS15_PIG8.503e-6077.8640S ribosomal protein S15 OS=Sus scrofa GN=RPS15 P... [more]
RS15_MOUSE8.503e-6077.8640S ribosomal protein S15 OS=Mus musculus GN=Rps15... [more]
RS15_MESAU8.503e-6077.8640S ribosomal protein S15 OS=Mesocricetus auratus ... [more]
RS15_HUMAN8.503e-6077.8640S ribosomal protein S15 OS=Homo sapiens GN=RPS15... [more]
RS15_CHICK8.503e-6077.8640S ribosomal protein S15 OS=Gallus gallus GN=RPS1... [more]
RS15_BOVIN1.894e-5977.1440S ribosomal protein S15 OS=Bos taurus GN=RPS15 P... [more]
RS15_XENLA1.604e-5875.7140S ribosomal protein S15 OS=Xenopus laevis GN=rps... [more]
RS15_XIPMA2.315e-5775.3640S ribosomal protein S15 OS=Xiphophorus maculatus... [more]
RS15B_SCHPO7.708e-5371.0140S ribosomal protein S15-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188344 ID=CN188344; Name=CN188344; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTCCCAGGTAAGGCAGGTTATATTAATCTCCCAAA
ATAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCACA
CTCTTTCAAAAGCTTTAATTAAAACTGAAAAGACAAAAACAGGCAGGTCC
AAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATGCA
AAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAATAC
CAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCGGCTAGG
TAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTGCC
ATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCATGT
TGCGAAGATGAGTCCTAACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCC
CTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTCAA
CCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
CATCAGTGGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGCTA
AACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCAGC
AACCCCGGTTTCCACATCCGCCATGCCTAGAGACTAGAGTGATAAGGAGA
ATCAAACACCTAATACGCGAGGGAGAGTGTGGGAAAGAGAGAGGGTTCGG
TAC
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