CN188344

Overview
NameCN188344
Unique NameCN188344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_IGNH4 (30S ribosomal protein S19P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 65/134 (48.51%), Postives = 89/134 (66.42%), Query Frame = -2
Query:  210 FKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 611
            +KKF +RG  L+ LL+M  D+  +L  AR RR  +RG       L++K+ KA++E   G+K + +RTH+R+M+I+P M+G  I VYNGK F  V+I PEMIGHYL EFS +   VKHG PG+ AT SS F+  K
Sbjct:    7 WKKFRYRGKTLEELLEMPLDDFIELLPARQRRSLKRGFNDAQRRLLEKVLKARKEMEKGKKVK-IRTHVRDMVILPIMVGLTIEVYNGKEFVPVKIVPEMIGHYLGEFSHTTAVVKHGEPGLKATRSSLFVAAK 139          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_HALSA (30S ribosomal protein S19P OS=Halobacterium salinarium GN=rps19p PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  210 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +F++RG DLD L +MS +++A+L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_HALS3 (30S ribosomal protein S19P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.258e-28
Identity = 60/132 (45.45%), Postives = 89/132 (67.42%), Query Frame = -2
Query:  210 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +F++RG DLD L +MS +++A+L  AR RR   RGL  +   ++ + R++  E        P+RTHLR+M ++PE +G    VY G+ F +VE++PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHDLDELQEMSLEDVAELLPARQRRTITRGLSEEHHKVLAEARESGTEETANN---PIRTHLRDMPVLPEFVGLTFAVYTGQEFERVEVQPEMIGHYLGEFQLTRSSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_HALWD (30S ribosomal protein S19P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps19p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 8.582e-28
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = -2
Query:  210 KFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKP-EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 605
            +F++RG  LD L  MS +++  L  AR RR  +RGL  +     +KLR+  R+A P +   +P+RTHLR+M I+P  +   I VYNG++F +V I+PEMIGHYL EF ++   V+HG+ GIGAT SS+F+PLK
Sbjct:   12 EFTYRGHTLDELQAMSLEDITALLPARQRRTIERGLTTEQ----QKLRETVRDADPQKTANDPIRTHLRDMPILPSFVEKTIAVYNGQSFERVRIEPEMIGHYLGEFQLTRTSVEHGQAGIGATRSSKFVPLK 140          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_THEVO (30S ribosomal protein S19P OS=Thermoplasma volcanium GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = -2
Query:  210 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 608
            K+FS++G  L+ L +MS +EL K+  ARARR   R +      L++KL         G+  + ++TH+R++II+P  +G I+ VYNG ++++ EIKPEMIGHYL EF ++ K VKH  PG+GAT SS+F+PLK
Sbjct:   28 KEFSYKGYTLEQLQEMSLEELIKILPARARRSLSREMNHDQKKLVEKLE--------GDYDD-IKTHVRDVIILPSYVGKIVEVYNGNSYSKFEIKPEMIGHYLGEFVMTRKEVKHSGPGVGATRSSKFMPLK 151          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_KORCO (30S ribosomal protein S19P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 63/133 (47.37%), Postives = 90/133 (67.67%), Query Frame = -2
Query:  210 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 608
            ++F +RG  L+ L  M+ DELA +  +R RR  +RGL  +   L+ K+RK K         + +RTH R+M I+PEM+GS I V+NGK F ++ I PEMIGHYL EF+++ + V+HG+PG GAT SS+F+PLK
Sbjct:    4 REFRYRGYTLEQLQTMTLDELANVMPSRIRRTLKRGLSIENKKLLDKIRKYKAMGID----KVIRTHRRDMPILPEMVGSKIAVHNGKEFVEITIVPEMIGHYLGEFAMTNRIVRHGKPGKGATRSSKFVPLK 132          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_ARCFU (30S ribosomal protein S19P OS=Archaeoglobus fulgidus GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.121e-27
Identity = 61/133 (45.86%), Postives = 87/133 (65.41%), Query Frame = -2
Query:  210 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 608
            + F +RG  L+ L  M  +ELAKL  AR RR+ +RG   +   L++KLRK              RTH R+M+++PEM+G ++ V+NGK F +VEIKPEMIGH L EF+++ +  KH  PG+GAT SS+++PLK
Sbjct:   11 RDFKYRGYTLEELQKMPLEELAKLLPARERRKIKRGFTEQEEKLLRKLRKKGT----------ARTHCRDMVVLPEMVGKVVFVHNGKEFVRVEIKPEMIGHRLGEFALTRRFEKHSGPGVGATRSSKYVPLK 133          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_PYRAR (30S ribosomal protein S19P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 67/131 (51.15%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  210 FSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 602
            F +RG  L+ LL+M  DE  KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   30 FRYRGKTLEELLNMPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVV-IKTHCRDMIILPEMVGLTIQVYNGITYIPVYISPWHIGHYLGEFALTTKIVQHGEPGLKATRSSLHIAAK 159          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_METMJ (30S ribosomal protein S19P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps19p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.464e-27
Identity = 64/139 (46.04%), Postives = 91/139 (65.47%), Query Frame = -2
Query:  210 PKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 626
            P++R  ++F++RG  +  L  M+  EL  L  ARARR+F RGL R+   L+  LR            E +RTHLR+MII+PEM+G  I ++NGK F +VEI+PE + HYL EF+++ + V HG  GIGAT SS+++PLK
Sbjct:   10 PRRR--EEFTYRGYSVADLQQMALSELLPLMPARARRKFDRGLSREHEKLLADLRSGD---------ENIRTHLRDMIIMPEMVGRSIEIHNGKEFQKVEIQPEAVFHYLGEFALTRRRVAHGSAGIGATRSSKYVPLK 137          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS19_THENV (30S ribosomal protein S19P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps19p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.261e-27
Identity = 66/131 (50.38%), Postives = 87/131 (66.41%), Query Frame = -2
Query:  210 FSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 602
            F +RG  L+ LL++  DE  KL  AR RR  +RGLK +   L++K+RKAKR A  G+K   ++TH R+MII+PEM+G  I VYNG T+  V I P  IGHYL EF+++ K V+HG PG+ AT SS  I  K
Sbjct:   29 FRYRGKTLEELLNLPMDEFIKLLPARQRRSLKRGLKPEHRKLLEKIRKAKRLAAQGKKVT-IKTHSRDMIILPEMVGLTIHVYNGITYIPVFISPWHIGHYLGEFALTTKVVQHGEPGLKATRSSLHIAAK 158          
The following BLAST results are available for this feature:
BLAST of CN188344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS19_IGNH42.258e-2848.5130S ribosomal protein S19P OS=Ignicoccus hospitali... [more]
RS19_HALSA2.258e-2845.4530S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALS32.258e-2845.4530S ribosomal protein S19P OS=Halobacterium salina... [more]
RS19_HALWD8.582e-2847.3730S ribosomal protein S19P OS=Haloquadratum walsby... [more]
RS19_THEVO1.121e-2745.8630S ribosomal protein S19P OS=Thermoplasma volcani... [more]
RS19_KORCO1.121e-2747.3730S ribosomal protein S19P OS=Korarchaeum cryptofi... [more]
RS19_ARCFU1.121e-2745.8630S ribosomal protein S19P OS=Archaeoglobus fulgid... [more]
RS19_PYRAR1.464e-2751.1530S ribosomal protein S19P OS=Pyrobaculum arsenati... [more]
RS19_METMJ1.464e-2746.0430S ribosomal protein S19P OS=Methanoculleus maris... [more]
RS19_THENV3.261e-2750.3830S ribosomal protein S19P OS=Thermoproteus neutro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188344 ID=CN188344; Name=CN188344; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTCCCAGGTAAGGCAGGTTATATTAATCTCCCAAA
ATAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCACA
CTCTTTCAAAAGCTTTAATTAAAACTGAAAAGACAAAAACAGGCAGGTCC
AAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATGCA
AAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAATAC
CAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCGGCTAGG
TAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTGCC
ATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCATGT
TGCGAAGATGAGTCCTAACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCC
CTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTCAA
CCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
CATCAGTGGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGCTA
AACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCAGC
AACCCCGGTTTCCACATCCGCCATGCCTAGAGACTAGAGTGATAAGGAGA
ATCAAACACCTAATACGCGAGGGAGAGTGTGGGAAAGAGAGAGGGTTCGG
TAC
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